Physics-based computational and theoretical approaches to intrinsically disordered proteins
Highlights•Liquid-liquid phase separation underlies the formation of membraneless
organelles within cells.•Theory and molecular simulations help to relate interactions at the …
organelles within cells.•Theory and molecular simulations help to relate interactions at the …
Interaction dynamics of intrinsically disordered proteins from single-molecule spectroscopy
A Chowdhury, D Nettels… - Annual review of …, 2023 - annualreviews.org
Many proteins contain large structurally disordered regions or are entirely disordered under
physiological conditions. The functions of these intrinsically disordered proteins (IDPs) often …
physiological conditions. The functions of these intrinsically disordered proteins (IDPs) often …
Extreme dynamics in a biomolecular condensate
Proteins and nucleic acids can phase-separate in the cell to form concentrated biomolecular
condensates,,–. The functions of condensates span many length scales: they modulate …
condensates,,–. The functions of condensates span many length scales: they modulate …
Competing protein-RNA interaction networks control multiphase intracellular organization
Liquid-liquid phase separation (LLPS) mediates formation of membraneless condensates
such as those associated with RNA processing, but the rules that dictate their assembly …
such as those associated with RNA processing, but the rules that dictate their assembly …
Valence and patterning of aromatic residues determine the phase behavior of prion-like domains
Prion-like domains (PLDs) can drive liquid-liquid phase separation (LLPS) in cells. Using an
integrative biophysical approach that includes nuclear magnetic resonance spectroscopy …
integrative biophysical approach that includes nuclear magnetic resonance spectroscopy …
Liquid–liquid phase separation modifies the dynamic properties of intrinsically disordered proteins
S Guseva, V Schnapka, W Adamski… - Journal of the …, 2023 - ACS Publications
Liquid–liquid phase separation of flexible biomolecules has been identified as a ubiquitous
phenomenon underlying the formation of membraneless organelles that harbor a multitude …
phenomenon underlying the formation of membraneless organelles that harbor a multitude …
Comparative roles of charge, π, and hydrophobic interactions in sequence-dependent phase separation of intrinsically disordered proteins
Endeavoring toward a transferable, predictive coarse-grained explicit-chain model for
biomolecular condensates underlain by liquid–liquid phase separation (LLPS) of proteins …
biomolecular condensates underlain by liquid–liquid phase separation (LLPS) of proteins …
Polycomb condensates can promote epigenetic marks but are not required for sustained chromatin compaction
JM Eeftens, M Kapoor, D Michieletto… - Nature …, 2021 - nature.com
Organization of the genome into transcriptionally active euchromatin and silenced
heterochromatin is essential for eukaryotic cell function. Phase-separation has been …
heterochromatin is essential for eukaryotic cell function. Phase-separation has been …
The protein folding problem: the role of theory
The protein folding problem was first articulated as question of how order arose from
disorder in proteins: How did the various native structures of proteins arise from interatomic …
disorder in proteins: How did the various native structures of proteins arise from interatomic …
Interaction hot spots for phase separation revealed by NMR studies of a CAPRIN1 condensed phase
TH Kim, BJ Payliss, ML Nosella… - Proceedings of the …, 2021 - National Acad Sciences
The role of biomolecular condensates in regulating biological function and the importance of
dynamic interactions involving intrinsically disordered protein regions (IDRs) in their …
dynamic interactions involving intrinsically disordered protein regions (IDRs) in their …