A new era in functional genomics screens
L Przybyla, LA Gilbert - Nature Reviews Genetics, 2022 - nature.com
The past 25 years of genomics research first revealed which genes are encoded by the
human genome and then a detailed catalogue of human genome variation associated with …
human genome and then a detailed catalogue of human genome variation associated with …
Transcriptional regulation of Wnt/β-catenin pathway in colorectal cancer
J Bian, M Dannappel, C Wan, R Firestein - Cells, 2020 - mdpi.com
The Wnt/β-catenin signaling pathway exerts integral roles in embryogenesis and adult
homeostasis. Aberrant activation of the pathway is implicated in growth-associated diseases …
homeostasis. Aberrant activation of the pathway is implicated in growth-associated diseases …
[HTML][HTML] Defining a cancer dependency map
Most human epithelial tumors harbor numerous alterations, making it difficult to predict
which genes are required for tumor survival. To systematically identify cancer dependencies …
which genes are required for tumor survival. To systematically identify cancer dependencies …
Mass spectrometry‐based protein–protein interaction networks for the study of human diseases
AL Richards, M Eckhardt, NJ Krogan - Molecular systems biology, 2021 - embopress.org
A better understanding of the molecular mechanisms underlying disease is key for
expediting the development of novel therapeutic interventions. Disease mechanisms are …
expediting the development of novel therapeutic interventions. Disease mechanisms are …
A scored human protein–protein interaction network to catalyze genomic interpretation
Genome-scale human protein–protein interaction networks are critical to understanding cell
biology and interpreting genomic data, but challenging to produce experimentally. Through …
biology and interpreting genomic data, but challenging to produce experimentally. Through …
CRISPRi and CRISPRa screens in mammalian cells for precision biology and medicine
M Kampmann - ACS chemical biology, 2018 - ACS Publications
Next-generation DNA sequencing technologies have led to a massive accumulation of
genomic and transcriptomic data from patients and healthy individuals. The major challenge …
genomic and transcriptomic data from patients and healthy individuals. The major challenge …
Mapping the genetic landscape of human cells
Seminal yeast studies have established the value of comprehensively mapping genetic
interactions (GIs) for inferring gene function. Efforts in human cells using focused gene sets …
interactions (GIs) for inferring gene function. Efforts in human cells using focused gene sets …
A genome-wide atlas of co-essential modules assigns function to uncharacterized genes
A central question in the post-genomic era is how genes interact to form biological
pathways. Measurements of gene dependency across hundreds of cell lines have been …
pathways. Measurements of gene dependency across hundreds of cell lines have been …
Cryo-EM reveals integrin-mediated TGF-β activation without release from latent TGF-β
Integrin αvβ8 binds with exquisite specificity to latent transforming growth factor-β (L-TGF-β).
This binding is essential for activating L-TGF-β presented by a variety of cell types. Inhibiting …
This binding is essential for activating L-TGF-β presented by a variety of cell types. Inhibiting …
RNAi/CRISPR screens: from a pool to a valid hit
A Schuster, H Erasimus, S Fritah, PV Nazarov… - Trends in …, 2019 - cell.com
High-throughput genetic screens interfering with gene expression are invaluable tools to
identify gene function and phenotype-to-genotype interactions. Implementing such screens …
identify gene function and phenotype-to-genotype interactions. Implementing such screens …