Challenges and directions in analytical paleobiology
Over the last 50 years, access to new data and analytical tools has expanded the study of
analytical paleobiology, contributing to innovative analyses of biodiversity dynamics over …
analytical paleobiology, contributing to innovative analyses of biodiversity dynamics over …
Fossils improve phylogenetic analyses of morphological characters
N Mongiardino Koch… - Proceedings of the …, 2021 - royalsocietypublishing.org
Fossils provide our only direct window into evolutionary events in the distant past.
Incorporating them into phylogenetic hypotheses of living clades can help time-calibrate …
Incorporating them into phylogenetic hypotheses of living clades can help time-calibrate …
A fungal plant pathogen discovered in the Devonian Rhynie Chert
C Strullu-Derrien, T Goral, ART Spencer… - Nature …, 2023 - nature.com
Fungi are integral to well-functioning ecosystems, and their broader impact on Earth systems
is widely acknowledged. Fossil evidence from the Rhynie Chert (Scotland, UK) shows that …
is widely acknowledged. Fossil evidence from the Rhynie Chert (Scotland, UK) shows that …
[图书][B] Phylogenetic comparative methods: a user's guide for paleontologists
Recent advances in statistical approaches called phylogenetic comparative methods
(PCMs) have provided paleontologists with a powerful set of analytical tools for investigating …
(PCMs) have provided paleontologists with a powerful set of analytical tools for investigating …
Impacts of taxon-sampling schemes on Bayesian tip dating under the fossilized birth-death process
Evolutionary timescales can be inferred by molecular-clock analyses of genetic data and
fossil evidence. Bayesian phylogenetic methods such as tip dating provide a powerful …
fossil evidence. Bayesian phylogenetic methods such as tip dating provide a powerful …
Estimating spatial variation in origination and extinction in deep time: a case study using the Permian–Triassic marine invertebrate fossil record
Understanding spatial variation in origination and extinction can help to unravel the
mechanisms underlying macroevolutionary patterns. Although methods have been …
mechanisms underlying macroevolutionary patterns. Although methods have been …
Evaluating the impact of anatomical partitioning on summary topologies obtained with Bayesian phylogenetic analyses of morphological data
Morphological data are a fundamental source of evidence to reconstruct the Tree of Life, and
Bayesian phylogenetic methods are increasingly being used for this task. Bayesian …
Bayesian phylogenetic methods are increasingly being used for this task. Bayesian …
TREvoSim v3: An individual based simulation for generating trees and character data
RJ Garwood, AR t Spencer… - Journal of Open …, 2024 - joss.theoj.org
Simulations provide valuable insights into the patterns and processes of evolution, and the
performance of analytical methods used to investigate empirical data (Barido-Sottani et al …
performance of analytical methods used to investigate empirical data (Barido-Sottani et al …
The role of dispersal, selection intensity, and extirpation risk in resilience to climate change: A trait‐based modelling approach
Aim Factors that make species resilient to climate change can be difficult to study with
empirical data because conditions cannot be experimentally controlled. We used trait‐based …
empirical data because conditions cannot be experimentally controlled. We used trait‐based …
paleobuddy: An R package for flexible simulations of diversification and fossil sampling
B do Rosario Petrucci, M Januario… - Methods in Ecology …, 2022 - Wiley Online Library
Simulations are powerful tools for investigating evolutionary questions. Statistical methods
for the analysis of diversification and fossil sampling rates require extensive testing through …
for the analysis of diversification and fossil sampling rates require extensive testing through …