Challenges and directions in analytical paleobiology

EM Dillon, EM Dunne, TM Womack, M Kouvari… - Paleobiology, 2023 - cambridge.org
Over the last 50 years, access to new data and analytical tools has expanded the study of
analytical paleobiology, contributing to innovative analyses of biodiversity dynamics over …

Fossils improve phylogenetic analyses of morphological characters

N Mongiardino Koch… - Proceedings of the …, 2021 - royalsocietypublishing.org
Fossils provide our only direct window into evolutionary events in the distant past.
Incorporating them into phylogenetic hypotheses of living clades can help time-calibrate …

A fungal plant pathogen discovered in the Devonian Rhynie Chert

C Strullu-Derrien, T Goral, ART Spencer… - Nature …, 2023 - nature.com
Fungi are integral to well-functioning ecosystems, and their broader impact on Earth systems
is widely acknowledged. Fossil evidence from the Rhynie Chert (Scotland, UK) shows that …

[图书][B] Phylogenetic comparative methods: a user's guide for paleontologists

LC Soul, DF Wright - 2021 - cambridge.org
Recent advances in statistical approaches called phylogenetic comparative methods
(PCMs) have provided paleontologists with a powerful set of analytical tools for investigating …

Impacts of taxon-sampling schemes on Bayesian tip dating under the fossilized birth-death process

A Luo, C Zhang, QS Zhou, SYW Ho… - Systematic Biology, 2023 - academic.oup.com
Evolutionary timescales can be inferred by molecular-clock analyses of genetic data and
fossil evidence. Bayesian phylogenetic methods such as tip dating provide a powerful …

Estimating spatial variation in origination and extinction in deep time: a case study using the Permian–Triassic marine invertebrate fossil record

BJ Allen, ME Clapham, EE Saupe, PB Wignall, DJ Hill… - Paleobiology, 2023 - cambridge.org
Understanding spatial variation in origination and extinction can help to unravel the
mechanisms underlying macroevolutionary patterns. Although methods have been …

Evaluating the impact of anatomical partitioning on summary topologies obtained with Bayesian phylogenetic analyses of morphological data

DM Casali, FV Freitas, FA Perini - Systematic Biology, 2023 - academic.oup.com
Morphological data are a fundamental source of evidence to reconstruct the Tree of Life, and
Bayesian phylogenetic methods are increasingly being used for this task. Bayesian …

TREvoSim v3: An individual based simulation for generating trees and character data

RJ Garwood, AR t Spencer… - Journal of Open …, 2024 - joss.theoj.org
Simulations provide valuable insights into the patterns and processes of evolution, and the
performance of analytical methods used to investigate empirical data (Barido-Sottani et al …

The role of dispersal, selection intensity, and extirpation risk in resilience to climate change: A trait‐based modelling approach

J Mo, PD Polly - Global Ecology and Biogeography, 2022 - Wiley Online Library
Aim Factors that make species resilient to climate change can be difficult to study with
empirical data because conditions cannot be experimentally controlled. We used trait‐based …

paleobuddy: An R package for flexible simulations of diversification and fossil sampling

B do Rosario Petrucci, M Januario… - Methods in Ecology …, 2022 - Wiley Online Library
Simulations are powerful tools for investigating evolutionary questions. Statistical methods
for the analysis of diversification and fossil sampling rates require extensive testing through …