Accuracy and interpretability: The devil and the holy grail. New routes across old boundaries in computational spectroscopy
The past decade has witnessed an increasing interaction between experiment and theory in
the field of molecular spectroscopy. On the computational side, ongoing developments of …
the field of molecular spectroscopy. On the computational side, ongoing developments of …
State of the art of molecular visualization in immersive virtual environments
D Kuťák, P Vázquez, T Isenberg… - Computer Graphics …, 2023 - Wiley Online Library
Visualization plays a crucial role in molecular and structural biology. It has been successfully
applied to a variety of tasks, including structural analysis and interactive drug design. While …
applied to a variety of tasks, including structural analysis and interactive drug design. While …
YASARA model–interactive molecular modeling from two dimensions to virtual realities
K Ozvoldik, T Stockner, E Krieger - Journal of Chemical …, 2023 - ACS Publications
The industry's transition from three-dimensional (3D) glasses to virtual reality (VR) headsets
has left modelers stranded without hardware supply, since walking around and waving arms …
has left modelers stranded without hardware supply, since walking around and waving arms …
Visualization of biomolecular structures: State of the art revisited
Structural properties of molecules are of primary concern in many fields. This report provides
a comprehensive overview on techniques that have been developed in the fields of …
a comprehensive overview on techniques that have been developed in the fields of …
Immersive virtual reality in computational chemistry: Applications to the analysis of QM and MM data
A Salvadori, G Del Frate, M Pagliai… - … journal of quantum …, 2016 - Wiley Online Library
Abstract The role of Virtual Reality (VR) tools in molecular sciences is analyzed in this
contribution through the presentation of the Caffeine software to the quantum chemistry …
contribution through the presentation of the Caffeine software to the quantum chemistry …
Visualizing protein structures—tools and trends
Molecular visualization is fundamental in the current scientific literature, textbooks and
dissemination materials. It provides an essential support for presenting results, reasoning on …
dissemination materials. It provides an essential support for presenting results, reasoning on …
Molecular dynamics visualization (mdv): stereoscopic 3d display of biomolecular structure and interactions using the unity game engine
M Wiebrands, CJ Malajczuk, AJ Woods… - Journal of integrative …, 2018 - degruyter.com
Molecular graphics systems are visualization tools which, upon integration into a 3D
immersive environment, provide a unique virtual reality experience for research and …
immersive environment, provide a unique virtual reality experience for research and …
Evaluation of emerging energy-efficient heterogeneous computing platforms for biomolecular and cellular simulation workloads
JE Stone, MJ Hallock, JC Phillips… - 2016 IEEE …, 2016 - ieeexplore.ieee.org
Many of the continuing scientific advances achieved through computational biology are
predicated on the availability of ongoing increases in computational power required for …
predicated on the availability of ongoing increases in computational power required for …
Early experiences porting the NAMD and VMD molecular simulation and analysis software to GPU-accelerated OpenPOWER platforms
JE Stone, AP Hynninen, JC Phillips… - … Computing: ISC High …, 2016 - Springer
All-atom molecular dynamics simulations of biomolecules provide a powerful tool for
exploring the structure and dynamics of large protein complexes within realistic cellular …
exploring the structure and dynamics of large protein complexes within realistic cellular …
Multiscale modeling and cinematic visualization of photosynthetic energy conversion processes from electronic to cell scales
M Sener, S Levy, JE Stone, AJ Christensen… - Parallel computing, 2021 - Elsevier
Conversion of sunlight into chemical energy, namely photosynthesis, is the primary energy
source of life on Earth. A visualization depicting this process, based on multiscale …
source of life on Earth. A visualization depicting this process, based on multiscale …