Aminoacyl-tRNA synthetases

MAR Gomez, M Ibba - Rna, 2020 - rnajournal.cshlp.org
The aminoacyl-tRNA synthetases are an essential and universally distributed family of
enzymes that plays a critical role in protein synthesis, pairing tRNAs with their cognate …

Reuse of public genome-wide gene expression data

J Rung, A Brazma - Nature Reviews Genetics, 2013 - nature.com
Our understanding of gene expression has changed dramatically over the past decade,
largely catalysed by technological developments. High-throughput experiments …

Estimating the population abundance of tissue-infiltrating immune and stromal cell populations using gene expression

E Becht, NA Giraldo, L Lacroix, B Buttard, N Elarouci… - Genome biology, 2016 - Springer
Abstract We introduce the Microenvironment Cell Populations-counter (MCP-counter)
method, which allows the robust quantification of the absolute abundance of eight immune …

Therapeutic target database update 2018: enriched resource for facilitating bench-to-clinic research of targeted therapeutics

YH Li, CY Yu, XX Li, P Zhang, J Tang… - Nucleic acids …, 2018 - academic.oup.com
Extensive efforts have been directed at the discovery, investigation and clinical monitoring of
targeted therapeutics. These efforts may be facilitated by the convenient access of the …

Robust enumeration of cell subsets from tissue expression profiles

AM Newman, CL Liu, MR Green, AJ Gentles, W Feng… - Nature …, 2015 - nature.com
We introduce CIBERSORT, a method for characterizing cell composition of complex tissues
from their gene expression profiles. When applied to enumeration of hematopoietic subsets …

Microenvironment-induced PTEN loss by exosomal microRNA primes brain metastasis outgrowth

L Zhang, S Zhang, J Yao, FJ Lowery, Q Zhang… - Nature, 2015 - nature.com
The development of life-threatening cancer metastases at distant organs requires
disseminated tumour cells' adaptation to, and co-evolution with, the drastically different …

The human transcriptome across tissues and individuals

M Melé, PG Ferreira, F Reverter, DS DeLuca… - Science, 2015 - science.org
Transcriptional regulation and posttranscriptional processing underlie many cellular and
organismal phenotypes. We used RNA sequence data generated by Genotype-Tissue …

Evaluating cell lines as tumour models by comparison of genomic profiles

S Domcke, R Sinha, DA Levine, C Sander… - Nature …, 2013 - nature.com
Cancer cell lines are frequently used as in vitro tumour models. Recent molecular profiles of
hundreds of cell lines from The Cancer Cell Line Encyclopedia and thousands of tumour …

A comprehensive transcriptional portrait of human cancer cell lines

C Klijn, S Durinck, EW Stawiski, PM Haverty… - Nature …, 2015 - nature.com
Tumor-derived cell lines have served as vital models to advance our understanding of
oncogene function and therapeutic responses. Although substantial effort has been made to …

CellNet: network biology applied to stem cell engineering

P Cahan, H Li, SA Morris, EL Da Rocha, GQ Daley… - Cell, 2014 - cell.com
Somatic cell reprogramming, directed differentiation of pluripotent stem cells, and direct
conversions between differentiated cell lineages represent powerful approaches to engineer …