FlyBase 2.0: the next generation

J Thurmond, JL Goodman, VB Strelets… - Nucleic acids …, 2019 - academic.oup.com
FlyBase (flybase. org) is a knowledge base that supports the community of researchers that
use the fruit fly, Drosophila melanogaster, as a model organism. The FlyBase team curates …

Integrating non-mammalian model organisms in the diagnosis of rare genetic diseases in humans

S Yamamoto, O Kanca, MF Wangler… - Nature Reviews …, 2024 - nature.com
Next-generation sequencing technology has rapidly accelerated the discovery of genetic
variants of interest in individuals with rare diseases. However, showing that these variants …

Pharos 2023: an integrated resource for the understudied human proteome

KJ Kelleher, TK Sheils, SL Mathias, JJ Yang… - Nucleic acids …, 2023 - academic.oup.com
Abstract The Illuminating the Druggable Genome (IDG) project aims to improve our
understanding of understudied proteins and our ability to study them in the context of …

A defect in mitochondrial fatty acid synthesis impairs iron metabolism and causes elevated ceramide levels

D Dutta, O Kanca, SK Byeon, PC Marcogliese… - Nature …, 2023 - nature.com
In most eukaryotic cells, fatty acid synthesis (FAS) occurs in the cytoplasm and in
mitochondria. However, the relative contribution of mitochondrial FAS (mtFAS) to the cellular …

Model organisms facilitate rare disease diagnosis and therapeutic research

MF Wangler, S Yamamoto, HT Chao, JE Posey… - Genetics, 2017 - academic.oup.com
Efforts to identify the genetic underpinnings of rare undiagnosed diseases increasingly
involve the use of next-generation sequencing and comparative genomic hybridization …

Xenbase: key features and resources of the Xenopus model organism knowledgebase

M Fisher, C James-Zorn, V Ponferrada, AJ Bell… - Genetics, 2023 - academic.oup.com
Abstract Xenbase (https://www. xenbase. org/), the Xenopus model organism
knowledgebase, is a web-accessible resource that integrates the diverse genomic and …

Model organisms contribute to diagnosis and discovery in the undiagnosed diseases network: current state and a future vision

D Baldridge, MF Wangler, AN Bowman… - Orphanet Journal of …, 2021 - Springer
Decreased sequencing costs have led to an explosion of genetic and genomic data. These
data have revealed thousands of candidate human disease variants. Establishing which …

Measuring intolerance to mutation in human genetics

ZL Fuller, JJ Berg, H Mostafavi, G Sella… - Nature Genetics, 2019 - nature.com
In numerous applications, from working with animal models to mapping the genetic basis of
human disease susceptibility, knowing whether a single disrupting mutation in a gene is …

PANGEA: a new gene set enrichment tool for Drosophila and common research organisms

Y Hu, A Comjean, H Attrill, G Antonazzo… - Nucleic Acids …, 2023 - academic.oup.com
Gene set enrichment analysis (GSEA) plays an important role in large-scale data analysis,
helping scientists discover the underlying biological patterns over-represented in a gene list …

The psychiatric cell map initiative: a convergent systems biological approach to illuminating key molecular pathways in neuropsychiatric disorders

AJ Willsey, MT Morris, S Wang, HR Willsey, N Sun… - Cell, 2018 - cell.com
Although gene discovery in neuropsychiatric disorders, including autism spectrum disorder,
intellectual disability, epilepsy, schizophrenia, and Tourette disorder, has accelerated …