Utilizing graph machine learning within drug discovery and development

T Gaudelet, B Day, AR Jamasb, J Soman… - Briefings in …, 2021 - academic.oup.com
Graph machine learning (GML) is receiving growing interest within the pharmaceutical and
biotechnology industries for its ability to model biomolecular structures, the functional …

[HTML][HTML] Image-based profiling for drug discovery: due for a machine-learning upgrade?

SN Chandrasekaran, H Ceulemans, JD Boyd… - Nature Reviews Drug …, 2021 - nature.com
Image-based profiling is a maturing strategy by which the rich information present in
biological images is reduced to a multidimensional profile, a collection of extracted image …

[HTML][HTML] CRISPR-Cas9 DNA base-editing and prime-editing

A Kantor, ME McClements, RE MacLaren - International journal of …, 2020 - mdpi.com
Many genetic diseases and undesirable traits are due to base-pair alterations in genomic
DNA. Base-editing, the newest evolution of clustered regularly interspaced short palindromic …

Synthetic lethality as an engine for cancer drug target discovery

A Huang, LA Garraway, A Ashworth… - Nature reviews Drug …, 2020 - nature.com
The first wave of genetically targeted therapies for cancer focused on drugging gene
products that are recurrently mutated in specific cancer types. However, mutational analysis …

[HTML][HTML] Transcriptome engineering with RNA-targeting type VI-D CRISPR effectors

S Konermann, P Lotfy, NJ Brideau, J Oki… - Cell, 2018 - cell.com
Class 2 CRISPR-Cas systems endow microbes with diverse mechanisms for adaptive
immunity. Here, we analyzed prokaryotic genome and metagenome sequences to identify …

[HTML][HTML] A next generation connectivity map: L1000 platform and the first 1,000,000 profiles

A Subramanian, R Narayan, SM Corsello, DD Peck… - Cell, 2017 - cell.com
We previously piloted the concept of a Connectivity Map (CMap), whereby genes, drugs,
and disease states are connected by virtue of common gene-expression signatures. Here …

Off-target toxicity is a common mechanism of action of cancer drugs undergoing clinical trials

A Lin, CJ Giuliano, A Palladino, KM John… - Science translational …, 2019 - science.org
Ninety-seven percent of drug-indication pairs that are tested in clinical trials in oncology
never advance to receive US Food and Drug Administration approval. While lack of efficacy …

[HTML][HTML] CRISPR/Cas9 mediated deletion of the adenosine A2A receptor enhances CAR T cell efficacy

L Giuffrida, K Sek, MA Henderson, J Lai… - Nature …, 2021 - nature.com
Adenosine is an immunosuppressive factor that limits anti-tumor immunity through the
suppression of multiple immune subsets including T cells via activation of the adenosine …

Am I ready for CRISPR? A user's guide to genetic screens

JG Doench - Nature Reviews Genetics, 2018 - nature.com
Exciting new technologies are often self-limiting in their rollout, as access to state-of-the-art
instrumentation or the need for years of hands-on experience, for better or worse, ensures …

[HTML][HTML] CRISPR-Cas13d induces efficient mRNA knockdown in animal embryos

G Kushawah, L Hernandez-Huertas, JAN Del Prado… - Developmental Cell, 2020 - cell.com
Early embryonic development is driven exclusively by maternal gene products deposited
into the oocyte. Although critical in establishing early developmental programs, maternal …