Utilizing graph machine learning within drug discovery and development
Graph machine learning (GML) is receiving growing interest within the pharmaceutical and
biotechnology industries for its ability to model biomolecular structures, the functional …
biotechnology industries for its ability to model biomolecular structures, the functional …
[HTML][HTML] Image-based profiling for drug discovery: due for a machine-learning upgrade?
SN Chandrasekaran, H Ceulemans, JD Boyd… - Nature Reviews Drug …, 2021 - nature.com
Image-based profiling is a maturing strategy by which the rich information present in
biological images is reduced to a multidimensional profile, a collection of extracted image …
biological images is reduced to a multidimensional profile, a collection of extracted image …
[HTML][HTML] CRISPR-Cas9 DNA base-editing and prime-editing
Many genetic diseases and undesirable traits are due to base-pair alterations in genomic
DNA. Base-editing, the newest evolution of clustered regularly interspaced short palindromic …
DNA. Base-editing, the newest evolution of clustered regularly interspaced short palindromic …
Synthetic lethality as an engine for cancer drug target discovery
A Huang, LA Garraway, A Ashworth… - Nature reviews Drug …, 2020 - nature.com
The first wave of genetically targeted therapies for cancer focused on drugging gene
products that are recurrently mutated in specific cancer types. However, mutational analysis …
products that are recurrently mutated in specific cancer types. However, mutational analysis …
[HTML][HTML] Transcriptome engineering with RNA-targeting type VI-D CRISPR effectors
Class 2 CRISPR-Cas systems endow microbes with diverse mechanisms for adaptive
immunity. Here, we analyzed prokaryotic genome and metagenome sequences to identify …
immunity. Here, we analyzed prokaryotic genome and metagenome sequences to identify …
[HTML][HTML] A next generation connectivity map: L1000 platform and the first 1,000,000 profiles
A Subramanian, R Narayan, SM Corsello, DD Peck… - Cell, 2017 - cell.com
We previously piloted the concept of a Connectivity Map (CMap), whereby genes, drugs,
and disease states are connected by virtue of common gene-expression signatures. Here …
and disease states are connected by virtue of common gene-expression signatures. Here …
Off-target toxicity is a common mechanism of action of cancer drugs undergoing clinical trials
A Lin, CJ Giuliano, A Palladino, KM John… - Science translational …, 2019 - science.org
Ninety-seven percent of drug-indication pairs that are tested in clinical trials in oncology
never advance to receive US Food and Drug Administration approval. While lack of efficacy …
never advance to receive US Food and Drug Administration approval. While lack of efficacy …
[HTML][HTML] CRISPR/Cas9 mediated deletion of the adenosine A2A receptor enhances CAR T cell efficacy
Adenosine is an immunosuppressive factor that limits anti-tumor immunity through the
suppression of multiple immune subsets including T cells via activation of the adenosine …
suppression of multiple immune subsets including T cells via activation of the adenosine …
Am I ready for CRISPR? A user's guide to genetic screens
JG Doench - Nature Reviews Genetics, 2018 - nature.com
Exciting new technologies are often self-limiting in their rollout, as access to state-of-the-art
instrumentation or the need for years of hands-on experience, for better or worse, ensures …
instrumentation or the need for years of hands-on experience, for better or worse, ensures …
[HTML][HTML] CRISPR-Cas13d induces efficient mRNA knockdown in animal embryos
G Kushawah, L Hernandez-Huertas, JAN Del Prado… - Developmental Cell, 2020 - cell.com
Early embryonic development is driven exclusively by maternal gene products deposited
into the oocyte. Although critical in establishing early developmental programs, maternal …
into the oocyte. Although critical in establishing early developmental programs, maternal …