[PDF][PDF] Diagnostics of pathogenic splicing mutations: does bioinformatics cover all bases

L Hartmann, S Theiss, D Niederacher, H Schaal - Front Biosci, 2008 - article.imrpress.com
Introduction 3. Identification of pathogenic splicing mutations and the dilemma of diagnosis
3.1. Mutation detection techniques 3.2. Interpretation of sequence variants 4. Splice sites …

Screening BRCA1 and BRCA2 unclassified variants for splicing mutations using reverse transcription PCR on patient RNA and an ex vivo assay based on a splicing …

C Bonnet, S Krieger, M Vezain, A Rousselin… - Journal of medical …, 2008 - jmg.bmj.com
Background: Many unclassified variants (UV) of BRCA1 or BRCA2 may have an effect on
pre-mRNA splicing. Patient blood samples suitable for RNA extraction are not always …

Intronic variants in BRCA1 and BRCA2 that affect RNA splicing can be reliably selected by splice‐site prediction programs

MPG Vreeswijk, JN Kraan, HM van der Klift… - Human …, 2009 - Wiley Online Library
A large number of sequence variants identified in BRCA1 and BRCA2 cannot be
distinguished as either disease‐causing mutations or neutral variants. These so‐called …

Single nucleotide polymorphisms in clinical genetic testing: the characterization of the clinical significance of genetic variants and their application in clinical research …

T Judkins, BC Hendrickson, AM Deffenbaugh… - Mutation Research …, 2005 - Elsevier
Clinical genetic testing is increasingly employed in the medical management of cancer
patients. These tests support a variety of clinical decisions by providing results that indicate …

Combined SSCP/duplex analysis by capillary electrophoresis for more efficient mutation detection

P Kozlowski, WJ Krzyzosiak - Nucleic Acids Research, 2001 - academic.oup.com
SSCP and heteroduplex analysis (HA) continue to be the most popular methods of mutation
detection due to their simplicity, high sensitivity and low cost. The advantages of these …

BRCA1 and BRCA2 mutations in breast/ovarian cancer patients from central Italy

L Stuppia, P Di Fulvio, G Aceto, S Pintor… - Human …, 2003 - Wiley Online Library
We report on the screening of the entire BRCA1/BRCA2 coding sequence by SSCP, PTT,
and direct sequencing in 68 Italian families with recurrent breast or ovarian cancer. For each …

RNA structure analysis assisted by capillary electrophoresis

K Sobczak, WJ Krzyzosiak - Nucleic Acids Research, 2002 - academic.oup.com
Although most capillary electrophoresis (CE) applications in the nucleic acid field performed
so far address DNA analysis, various RNA assays by CE have also been done. Both natural …

Prevalence of BRCA1 founder mutations in western Poland

A Jasinska, WJ Krzyzosiak - Human Mutation, 2001 - Wiley Online Library
The frequency of three BRCA1 founder mutations was examined in a group of Polish
breast/ovarian cancer patients and women at increased risk of these cancers based on …

Sequence Alterations Can Mask Each Other's Presence during Screening with SSCP or Heteroduplex Analysis: BRCA Genes as Examples

TI Orban, B Csokay, E Olah - Biotechniques, 2000 - Taylor & Francis
For mutation detection, various screening techniques are widely used because DNA
sequencing, the gold-standard method, is still considered to be expensive and laborious for …

Allelic imbalance of BRCA1 transcript in the IVS20 12‐bp insertion carrier

P Kozlowski, K Sobczak, A Jasinska… - Human …, 2000 - Wiley Online Library
One of the unclassified variants of the BRCA1 gene which has drawn considerable attention
in recent years is the 12‐bp insertion/duplication in intron 20. In this report, we show that a …