Expanding frontiers in plant transcriptomics in aid of functional genomics and molecular breeding

P Agarwal, SK Parida, A Mahto, S Das… - Biotechnology …, 2014 - Wiley Online Library
The transcript pool of a plant part, under any given condition, is a collection of mRNAs that
will pave the way for a biochemical reaction of the plant to stimuli. Over the past decades …

Association mapping of plant resistance to insects

KJ Kloth, MPM Thoen, HJ Bouwmeester… - Trends in plant …, 2012 - cell.com
Association mapping is rapidly becoming an important method to explore the genetic
architecture of complex traits in plants and offers unique opportunities for studying …

The power of inbreeding: NGS-based GWAS of rice reveals convergent evolution during rice domestication

H Wang, X Xu, FG Vieira, Y Xiao, Z Li, J Wang… - Molecular Plant, 2016 - cell.com
Low-coverage whole-genome sequencing is an effective strategy for genome-wide
association studies in humans, due to the availability of large reference panels for genotype …

Association mapping of six yield-related traits in rapeseed (Brassica napus L.)

D Cai, Y Xiao, W Yang, W Ye, B Wang… - Theoretical and Applied …, 2014 - Springer
Yield is one of the most important traits for rapeseed (Brassica napus L.) breeding, but its
genetic basis remains largely ambiguous. Association mapping has provided a robust …

Assessment of five chilling tolerance traits and GWAS mapping in rice using the USDA mini-core collection

MR Schläppi, AK Jackson, GC Eizenga… - Frontiers in plant …, 2017 - frontiersin.org
Rice (Oryza sativa L.) is often exposed to cool temperatures during spring planting in
temperate climates. A better understanding of genetic pathways regulating chilling tolerance …

Allelic analysis of sheath blight resistance with association mapping in rice

L Jia, W Yan, C Zhu, HA Agrama, A Jackson, K Yeater… - Plos one, 2012 - journals.plos.org
Sheath blight (ShB) caused by the soil-borne pathogen Rhizoctonia solani is one of the most
devastating diseases in rice world-wide. Global attention has focused on examining …

Determination of the genetic architecture of seed size and shape via linkage and association analysis in soybean (Glycine max L. Merr.)

Z Hu, H Zhang, G Kan, D Ma, D Zhang, G Shi, D Hong… - Genetica, 2013 - Springer
Seed-size traits, which are controlled by multiple genes in soybean, play an important role in
determining seed yield, quality and appearance. However, the molecular mechanisms …

Unraveling the Complex Trait of Harvest Index with Association Mapping in Rice (Oryza sativa L.)

X Li, W Yan, H Agrama, L Jia, A Jackson… - PLoS …, 2012 - journals.plos.org
Harvest index is a measure of success in partitioning assimilated photosynthate. An
improvement of harvest index means an increase in the economic portion of the plant. Our …

Association Mapping for Important Agronomic Traits in Core Collection of Rice (Oryza sativa L.) with SSR Markers

P Zhang, X Liu, H Tong, Y Lu, J Li - PloS one, 2014 - journals.plos.org
Mining elite genes within rice landraces is of importance for the improvement of cultivated
rice. An association mapping for 12 agronomic traits was carried out using a core collection …

In-depth genome characterization of a Brazilian common bean core collection using DArTseq high-density SNP genotyping

PAMR Valdisser, WJ Pereira, JE Almeida Filho… - BMC genomics, 2017 - Springer
Background Common bean is a legume of social and nutritional importance as a food crop,
cultivated worldwide especially in developing countries, accounting for an important source …