[HTML][HTML] Reversing DNA methylation: mechanisms, genomics, and biological functions

H Wu, Y Zhang - Cell, 2014 - cell.com
Methylation of cytosines in the mammalian genome represents a key epigenetic modification
and is dynamically regulated during development. Compelling evidence now suggests that …

DNA methylation methods: Global DNA methylation and methylomic analyses

S Li, TO Tollefsbol - Methods, 2021 - Elsevier
DNA methylation provides a pivotal layer of epigenetic regulation in eukaryotes that has
significant involvement for numerous biological processes in health and disease. The …

[图书][B] Solid-state nanopore sensors for nucleic acid analysis

BM Venkatesan, R Bashir - 2011 - Springer
Solid-state nanopores are nm sized apertures formed in thin synthetic membranes. These
single molecule sensors have been used in a variety of biophysical and diagnostic …

Nanopores: A journey towards DNA sequencing

M Wanunu - Physics of life reviews, 2012 - Elsevier
Much more than ever, nucleic acids are recognized as key building blocks in many of lifeʼs
processes, and the science of studying these molecular wonders at the single-molecule …

Uncovering the role of 5-hydroxymethylcytosine in the epigenome

MR Branco, G Ficz, W Reik - Nature Reviews Genetics, 2012 - nature.com
Just over 2 years ago, TET1 was found to catalyse the oxidation of 5-methylcytosine, a well-
known epigenetic mark, into 5-hydroxymethylcytosine in mammalian DNA. The exciting …

Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution

MJ Booth, MR Branco, G Ficz, D Oxley, F Krueger… - Science, 2012 - science.org
5-Methylcytosine can be converted to 5-hydroxymethylcytosine (5hmC) in mammalian DNA
by the ten-eleven translocation (TET) enzymes. We introduce oxidative bisulfite sequencing …

Single-cell epigenomics: powerful new methods for understanding gene regulation and cell identity

SJ Clark, HJ Lee, SA Smallwood, G Kelsey, W Reik - Genome biology, 2016 - Springer
Emerging single-cell epigenomic methods are being developed with the exciting potential to
transform our knowledge of gene regulation. Here we review available techniques and …

Nanopore sensors for biomolecular characterization

R Bashir, BM Venkatesan - US Patent 10,175,195, 2019 - Google Patents
Provided herein are methods and devices for characterizing a biomolecule parameter by a
nanopore-containing mem brane, and also methods for making devices that can be used in …

The birth of the Epitranscriptome: deciphering the function of RNA modifications

Y Saletore, K Meyer, J Korlach, ID Vilfan, S Jaffrey… - Genome biology, 2012 - Springer
Recent studies have found methyl-6-adenosine in thousands of mammalian genes, and this
modification is most pronounced near the beginning of the 3'UTR. We present a perspective …

Detection and mapping of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore MspA

AH Laszlo, IM Derrington… - Proceedings of the …, 2013 - National Acad Sciences
Precise and efficient mapping of epigenetic markers on DNA may become an important
clinical tool for prediction and identification of ailments. Methylated CpG sites are involved in …