Mixtures Recomposition by Neural Nets: A Multidisciplinary Overview
Artificial Neural Networks (ANNs) are transforming how we understand chemical mixtures,
providing an expressive view of the chemical space and multiscale processes. Their …
providing an expressive view of the chemical space and multiscale processes. Their …
Environmental conditions drive self-organization of reaction pathways in a prebiotic reaction network
WE Robinson, E Daines, P van Duppen, T de Jong… - Nature Chemistry, 2022 - nature.com
The evolution of life from the prebiotic environment required a gradual process of chemical
evolution towards greater molecular complexity. Elaborate prebiotically relevant synthetic …
evolution towards greater molecular complexity. Elaborate prebiotically relevant synthetic …
Hidden concepts in the history and philosophy of origins-of-life studies: A workshop report
In this review, we describe some of the central philosophical issues facing origins-of-life
research and provide a targeted history of the developments that have led to the …
research and provide a targeted history of the developments that have led to the …
Kinetic and thermodynamic evidences of the Diels-Alder cycloaddition and Pechmann condensation as key mechanisms of hydrochar formation during hydrothermal …
We investigated the kinetics and thermodynamics of the Diels-Alder cycloaddition and
Pechmann condensation to evaluate the significance of both mechanisms toward hydrochar …
Pechmann condensation to evaluate the significance of both mechanisms toward hydrochar …
A software package for chemically inspired graph transformation
Chemical reaction networks can be automatically generated from graph grammar
descriptions, where transformation rules model reaction patterns. Because a molecule graph …
descriptions, where transformation rules model reaction patterns. Because a molecule graph …
An open source computational workflow for the discovery of autocatalytic networks in abiotic reactions
A central question in origins of life research is how non-entailed chemical processes, which
simply dissipate chemical energy because they can do so due to immediate reaction kinetics …
simply dissipate chemical energy because they can do so due to immediate reaction kinetics …
Chemical transformation motifs—modelling pathways as integer hyperflows
We present an elaborate framework for formally modelling pathways in chemical reaction
networks on a mechanistic level. Networks are modelled mathematically as directed multi …
networks on a mechanistic level. Networks are modelled mathematically as directed multi …
An intermediate level of abstraction for computational systems chemistry
Computational techniques are required for narrowing down the vast space of possibilities to
plausible prebiotic scenarios, because precise information on the molecular composition …
plausible prebiotic scenarios, because precise information on the molecular composition …
An automated scientist to design and optimize microbial strains for the industrial production of small molecules
Engineering microbes to synthesize molecules of societal value has historically been a time
consuming and artisanal process, with the synthesis of each new non-native molecule …
consuming and artisanal process, with the synthesis of each new non-native molecule …
Spaces of mathematical chemistry
G Restrepo - Theory in Biosciences, 2024 - Springer
In an effort to expand the domain of mathematical chemistry and inspire research beyond
the realms of graph theory and quantum chemistry, we explore five mathematical chemistry …
the realms of graph theory and quantum chemistry, we explore five mathematical chemistry …