Going where traditional markers have not gone before: utility of and promise for RAD sequencing in marine invertebrate phylogeography and population genomics

AM Reitzel, S Herrera, MJ Layden… - Molecular …, 2013 - Wiley Online Library
Abstract Characterization of large numbers of single‐nucleotide polymorphisms (SNP s)
throughout a genome has the power to refine the understanding of population demographic …

Practical low‐coverage genomewide sequencing of hundreds of individually barcoded samples for population and evolutionary genomics in nonmodel species

NO Therkildsen, SR Palumbi - Molecular ecology resources, 2017 - Wiley Online Library
Today most population genomic studies of nonmodel organisms either sequence a subset of
the genome deeply in each individual or sequence pools of unlabelled individuals. With a …

Full mitochondrial genome sequences reveal new insights about post-glacial expansion and regional phylogeographic structure in the Atlantic silverside (Menidia …

RN Lou, NK Fletcher, AP Wilder, DO Conover… - Marine biology, 2018 - Springer
One of the biggest challenges in population genetics of marine species is to uncover subtle
phylogeographic patterns masked by large effective population sizes and/or high gene flow …

Footprints of local adaptation span hundreds of linked genes in the Atlantic silverside genome

AP Wilder, SR Palumbi, DO Conover… - Evolution …, 2020 - academic.oup.com
The study of local adaptation in the presence of ongoing gene flow is the study of natural
selection in action, revealing the functional genetic diversity most relevant to contemporary …

Managing a marine stock portfolio: stock identification, structure, and management of 25 fishery species along the Atlantic coast of the United States

RS McBride - North American Journal of Fisheries Management, 2014 - Taylor & Francis
In this review, stock identification methods used, resulting stock numbers and boundaries,
and assessment and management context were explored for all 25 species managed by the …

Genetic differentiation and reduced genetic diversity at the northern range edge of two species with different dispersal modes

AE Cahill, JS Levinton - Molecular ecology, 2016 - Wiley Online Library
Abstract Theory predicts that genetic variation should be reduced at range margins, but
empirical support is equivocal. Here, we used genotyping‐by‐sequencing technology to …

Asymmetric genetic exchange in the brown seaweed Sargassum fusiforme (Phaeophyceae) driven by oceanic currents

ZM Hu, J Zhang, J Lopez-Bautista, DL Duan - Marine Biology, 2013 - Springer
Geological phenomena (eg drastic sea level fluctuations during the Quaternary Ice Age in
the Northern Hemisphere) have been demonstrated to intensively affect the biogeographic …

Fine‐scale population structure of the northern hard clam (Mercenaria mercenaria) revealed by genome‐wide SNP markers

AJ Ropp, KS Reece, RA Snyder, J Song… - Evolutionary …, 2023 - Wiley Online Library
Aquaculture is growing rapidly worldwide, and sustainability is dependent on an
understanding of current genetic variation and levels of connectivity among populations …

Genomic signatures of spatially divergent selection at clownfish range margins

RD Clark, ML Aardema, P Andolfatto… - … of the Royal …, 2021 - royalsocietypublishing.org
Understanding how evolutionary forces interact to drive patterns of selection and distribute
genetic variation across a species' range is of great interest in ecology and evolution …

Pattern and scale of geographic variation in environmental sex determination in the Atlantic silverside, Menidia menidia

TA Duffy, LA Hice, DO Conover - Evolution, 2015 - academic.oup.com
Abstract The Atlantic silverside, Menidia menidia (Pisces: Atherinidae), exhibits an
exceptionally high level of clinal variation in sex determination across its geographic range …