[HTML][HTML] Is non-homologous end-joining really an inherently error-prone process?

M Bétermier, P Bertrand, BS Lopez - PLoS genetics, 2014 - journals.plos.org
DNA double-strand breaks (DSBs) are harmful lesions leading to genomic instability or
diversity. Non-homologous end-joining (NHEJ) is a prominent DSB repair pathway, which …

[PDF][PDF] Mobile genetic elements and evolution of CRISPR-Cas systems: all the way there and back

EV Koonin, KS Makarova - Genome biology and evolution, 2017 - academic.oup.com
Abstract The Clustered Regularly Interspaced Palindromic Repeats (CRISPR)-CRISPR-
associated proteins (Cas) systems of bacterial and archaeal adaptive immunity show …

From “cellular” RNA to “smart” RNA: multiple roles of RNA in genome stability and beyond

F Michelini, AP Jalihal, S Francia, C Meers… - Chemical …, 2018 - ACS Publications
Coding for proteins has been considered the main function of RNA since the “central
dogma” of biology was proposed. The discovery of noncoding transcripts shed light on …

Genome-defence small RNAs exapted for epigenetic mating-type inheritance

DP Singh, B Saudemont, G Guglielmi, O Arnaiz… - Nature, 2014 - nature.com
In the ciliate Paramecium, transposable elements and their single-copy remnants are
deleted during the development of somatic macronuclei from germline micronuclei, at each …

Programmed Rearrangement in Ciliates: Paramecium

M Betermier, S Duharcourt - Mobile DNA III, 2015 - Wiley Online Library
Ciliates belong to a monophyletic group of unicellular eukaryotes within the Alveolate
branch (1). The species that have been used as model organisms are free‐living organisms …

The piggyBac transposon-derived genes TPB1 and TPB6 mediate essential transposon-like excision during the developmental rearrangement of key genes in …

CY Cheng, JM Young, CYG Lin, JL Chao… - Genes & …, 2016 - genesdev.cshlp.org
Ciliated protozoans perform extreme forms of programmed somatic DNA rearrangement
during development. The model ciliate Tetrahymena thermophila removes 34% of its …

Chromatin remodeling is required for sRNA‐guided DNA elimination in Paramecium

A Singh, XX Maurer‐Alcalá, T Solberg… - The EMBO …, 2022 - embopress.org
Small RNAs mediate the silencing of transposable elements and other genomic loci,
increasing nucleosome density and preventing undesirable gene expression. The …

[HTML][HTML] CRISPR: a new principle of genome engineering linked to conceptual shifts in evolutionary biology

EV Koonin - Biology & Philosophy, 2019 - Springer
The CRISPR-Cas systems of bacterial and archaeal adaptive immunity have become a
household name among biologists and even the general public thanks to the …

[HTML][HTML] Ku-Mediated Coupling of DNA Cleavage and Repair during Programmed Genome Rearrangements in the Ciliate Paramecium tetraurelia

A Marmignon, J Bischerour, A Silve, C Fojcik… - PLoS …, 2014 - journals.plos.org
During somatic differentiation, physiological DNA double-strand breaks (DSB) can drive
programmed genome rearrangements (PGR), during which DSB repair pathways are …

[HTML][HTML] Functional diversification of Paramecium Ku80 paralogs safeguards genome integrity during precise programmed DNA elimination

A Abello, V Régnier, O Arnaiz, R Le Bars… - PLoS …, 2020 - journals.plos.org
Gene duplication and diversification drive the emergence of novel functions during
evolution. Because of whole genome duplications, ciliates from the Paramecium aurelia …