Beyond a reference genome: pangenomes and population genomics of underutilized and orphan crops for future food and nutrition security
MA Chapman, Y He, M Zhou - New Phytologist, 2022 - Wiley Online Library
Underutilized crops are, by definition, under‐researched compared to staple crops yet come
with traits that may be especially important given climate change and the need to feed a …
with traits that may be especially important given climate change and the need to feed a …
TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads
P Novák, L Ávila Robledillo, A Koblížková… - Nucleic acids …, 2017 - academic.oup.com
Satellite DNA is one of the major classes of repetitive DNA, characterized by tandemly
arranged repeat copies that form contiguous arrays up to megabases in length. This type of …
arranged repeat copies that form contiguous arrays up to megabases in length. This type of …
Genomics and evolution in traditional medicinal plants: road to a healthier life
DC Hao, PG Xiao - Evolutionary Bioinformatics, 2015 - journals.sagepub.com
Medicinal plants have long been utilized in traditional medicine and ethnomedicine
worldwide. This review presents a glimpse of the current status of and future trends in …
worldwide. This review presents a glimpse of the current status of and future trends in …
In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae
The differential accumulation and elimination of repetitive DNA are key drivers of genome
size variation in flowering plants, yet there have been few studies which have analysed how …
size variation in flowering plants, yet there have been few studies which have analysed how …
The repetitive DNA landscape in Avena (Poaceae): chromosome and genome evolution defined by major repeat classes in whole-genome sequence reads
Q Liu, X Li, X Zhou, M Li, F Zhang, T Schwarzacher… - BMC plant biology, 2019 - Springer
Background Repetitive DNA motifs–not coding genetic information and repeated millions to
hundreds of times–make up the majority of many genomes. Here, we identify the nature …
hundreds of times–make up the majority of many genomes. Here, we identify the nature …
B chromosome contains active genes and impacts the transcription of A chromosomes in maize (Zea mays L.)
W Huang, Y Du, X Zhao, W Jin - BMC Plant Biology, 2016 - Springer
Abstract Background The dispensable maize (Zea mays L.) B chromosome is highly
heterochromatic and widely believed to be devoid of functional genes. Although low-copy B …
heterochromatic and widely believed to be devoid of functional genes. Although low-copy B …
Evolution and domestication footprints uncovered from the genomes of Coix
Coix lacryma-jobi, a plant species closely related to Zea and Sorghum, is an important food
and medicinal crop in Asia. However, no reference genome of this species has been …
and medicinal crop in Asia. However, no reference genome of this species has been …
Cyto-molecular characterization of rDNA and chromatin composition in the NOR-associated satellite in Chestnut (Castanea spp.)
N Islam-Faridi, GL Hodnett, T Zhebentyayeva… - Scientific reports, 2024 - nature.com
Abstract The American chestnut (Castanea dentata, 2 n= 2 x= 24), once known as the “King
of the Appalachian Forest”, was decimated by chestnut blight during the first half of the …
of the Appalachian Forest”, was decimated by chestnut blight during the first half of the …
Repetitive sequence analysis and karyotyping reveals centromere-associated DNA sequences in radish (Raphanus sativus L.)
Abstract Background Radish (Raphanus sativus L., 2n= 2x= 18) is a major root vegetable
crop especially in eastern Asia. Radish root contains various nutritions which play an …
crop especially in eastern Asia. Radish root contains various nutritions which play an …
The Coix genome provides insights into Panicoideae evolution and papery hull domestication
C Guo, Y Wang, A Yang, J He, C Xiao, S Lv, F Han… - Molecular plant, 2020 - cell.com
Coix is a grass crop domesticated as early as the Neolithic era. It is still widely cultivated for
both highly nutritional food and medicinal use. However, the genetic study and breeding of …
both highly nutritional food and medicinal use. However, the genetic study and breeding of …