Best practices in metabarcoding of fungi: from experimental design to results
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …
[HTML][HTML] Current and emerging trends in techniques for plant pathogen detection
M Venbrux, S Crauwels, H Rediers - Frontiers in Plant Science, 2023 - frontiersin.org
Plant pathogenic microorganisms cause substantial yield losses in several economically
important crops, resulting in economic and social adversity. The spread of such plant …
important crops, resulting in economic and social adversity. The spread of such plant …
Differential soil fungus accumulation and density dependence of trees in a subtropical forest
The mechanisms underlying interspecific variation in conspecific negative density
dependence (CNDD) are poorly understood. Using a multilevel modeling approach, we …
dependence (CNDD) are poorly understood. Using a multilevel modeling approach, we …
Inferring microbiota functions from taxonomic genes: a review
C Djemiel, PA Maron, S Terrat, S Dequiedt… - …, 2022 - academic.oup.com
Deciphering microbiota functions is crucial to predict ecosystem sustainability in response to
global change. High-throughput sequencing at the individual or community level has …
global change. High-throughput sequencing at the individual or community level has …
Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance
Trap-based surveillance strategies are widely used for monitoring of invasive insect species,
aiming to detect newly arrived exotic taxa as well as track the population levels of …
aiming to detect newly arrived exotic taxa as well as track the population levels of …
[HTML][HTML] Metagenomics approaches for the detection and surveillance of emerging and recurrent plant pathogens
Globalization has a dramatic effect on the trade and movement of seeds, fruits and
vegetables, with a corresponding increase in economic losses caused by the introduction of …
vegetables, with a corresponding increase in economic losses caused by the introduction of …
Diseases in edible insect rearing systems
G Maciel-Vergara, AB Jensen… - Journal of Insects …, 2021 - wageningenacademic.com
Due to a swift and continuous growth of the insect rearing industry during the last two
decades, there is a need for a better understanding of insect diseases (caused by insect …
decades, there is a need for a better understanding of insect diseases (caused by insect …
Relative performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) third-generation sequencing instruments in identification of …
Culture-based molecular identification methods have revolutionized detection of pathogens,
yet these methods are slow and may yield inconclusive results from environmental …
yet these methods are slow and may yield inconclusive results from environmental …
[HTML][HTML] Extensive intragenomic variation in the internal transcribed spacer region of fungi
Fungi are among the most biodiverse organisms in the world. Accurate species identification
is imperative for studies on fungal ecology and evolution. The internal transcribed spacer …
is imperative for studies on fungal ecology and evolution. The internal transcribed spacer …
[HTML][HTML] Potential of meta-omics to provide modern microbial indicators for monitoring soil quality and securing food production
Soils are fundamental resources for agricultural production and play an essential role in
food security. They represent the keystone of the food value chain because they harbor a …
food security. They represent the keystone of the food value chain because they harbor a …