Best practices in metabarcoding of fungi: from experimental design to results

L Tedersoo, M Bahram, L Zinger, RH Nilsson… - Molecular …, 2022 - Wiley Online Library
The development of high‐throughput sequencing (HTS) technologies has greatly improved
our capacity to identify fungi and unveil their ecological roles across a variety of ecosystems …

[HTML][HTML] Current and emerging trends in techniques for plant pathogen detection

M Venbrux, S Crauwels, H Rediers - Frontiers in Plant Science, 2023 - frontiersin.org
Plant pathogenic microorganisms cause substantial yield losses in several economically
important crops, resulting in economic and social adversity. The spread of such plant …

Differential soil fungus accumulation and density dependence of trees in a subtropical forest

L Chen, NG Swenson, N Ji, X Mi, H Ren, L Guo, K Ma - Science, 2019 - science.org
The mechanisms underlying interspecific variation in conspecific negative density
dependence (CNDD) are poorly understood. Using a multilevel modeling approach, we …

Inferring microbiota functions from taxonomic genes: a review

C Djemiel, PA Maron, S Terrat, S Dequiedt… - …, 2022 - academic.oup.com
Deciphering microbiota functions is crucial to predict ecosystem sustainability in response to
global change. High-throughput sequencing at the individual or community level has …

Prospects and challenges of implementing DNA metabarcoding for high-throughput insect surveillance

AM Piper, J Batovska, NOI Cogan, J Weiss… - …, 2019 - academic.oup.com
Trap-based surveillance strategies are widely used for monitoring of invasive insect species,
aiming to detect newly arrived exotic taxa as well as track the population levels of …

[HTML][HTML] Metagenomics approaches for the detection and surveillance of emerging and recurrent plant pathogens

E Piombo, A Abdelfattah, S Droby, M Wisniewski… - Microorganisms, 2021 - mdpi.com
Globalization has a dramatic effect on the trade and movement of seeds, fruits and
vegetables, with a corresponding increase in economic losses caused by the introduction of …

Diseases in edible insect rearing systems

G Maciel-Vergara, AB Jensen… - Journal of Insects …, 2021 - wageningenacademic.com
Due to a swift and continuous growth of the insect rearing industry during the last two
decades, there is a need for a better understanding of insect diseases (caused by insect …

Relative performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) third-generation sequencing instruments in identification of …

K Loit, K Adamson, M Bahram, R Puusepp… - Applied and …, 2019 - Am Soc Microbiol
Culture-based molecular identification methods have revolutionized detection of pathogens,
yet these methods are slow and may yield inconclusive results from environmental …

[HTML][HTML] Extensive intragenomic variation in the internal transcribed spacer region of fungi

MJ Bradshaw, MC Aime, A Rokas, A Maust, S Moparthi… - IScience, 2023 - cell.com
Fungi are among the most biodiverse organisms in the world. Accurate species identification
is imperative for studies on fungal ecology and evolution. The internal transcribed spacer …

[HTML][HTML] Potential of meta-omics to provide modern microbial indicators for monitoring soil quality and securing food production

C Djemiel, S Dequiedt, B Karimi, A Cottin… - Frontiers in …, 2022 - frontiersin.org
Soils are fundamental resources for agricultural production and play an essential role in
food security. They represent the keystone of the food value chain because they harbor a …