RNA modifications in pathogenic bacteria: impact on host adaptation and virulence
L Antoine, R Bahena-Ceron, H Devi Bunwaree… - Genes, 2021 - mdpi.com
RNA modifications are involved in numerous biological processes and are present in all
RNA classes. These modifications can be constitutive or modulated in response to adaptive …
RNA classes. These modifications can be constitutive or modulated in response to adaptive …
Methylartist: tools for visualizing modified bases from nanopore sequence data
SW Cheetham, M Kindlova, AD Ewing - Bioinformatics, 2022 - academic.oup.com
Methylartist is a consolidated suite of tools for processing, visualizing and analysing
nanopore-derived modified base calls. All detectable methylation types (eg 5mCpG, 5hmC …
nanopore-derived modified base calls. All detectable methylation types (eg 5mCpG, 5hmC …
Native RNA nanopore sequencing reveals antibiotic-induced loss of rRNA modifications in the A-and P-sites
The biological relevance and dynamics of mRNA modifications have been extensively
studied; however, whether rRNA modifications are dynamically regulated, and under which …
studied; however, whether rRNA modifications are dynamically regulated, and under which …
The Stress-Dependent Dynamics of Saccharomyces cerevisiae tRNA and rRNA Modification Profiles
Y Yoluç, E van de Logt, S Kellner-Kaiser - Genes, 2021 - mdpi.com
RNAs are key players in the cell, and to fulfil their functions, they are enzymatically modified.
These modifications have been found to be dynamic and dependent on internal and …
These modifications have been found to be dynamic and dependent on internal and …
ModPhred: an integrative toolkit for the analysis and storage of nanopore sequencing DNA and RNA modification data
LP Pryszcz, EM Novoa - Bioinformatics, 2022 - academic.oup.com
Motivation DNA and RNA modifications can now be identified using nanopore sequencing.
However, we currently lack a flexible software to efficiently encode, store, analyze and …
However, we currently lack a flexible software to efficiently encode, store, analyze and …
The m6A landscape of polyadenylated nuclear (PAN) RNA and its related methylome in the context of KSHV replication
Polyadenylated nuclear (PAN) RNA is a long noncoding transcript involved in Kaposi's
sarcoma-associated herpesvirus (KSHV) lytic reactivation and regulation of cellular and viral …
sarcoma-associated herpesvirus (KSHV) lytic reactivation and regulation of cellular and viral …