Phage biocontrol applications in food production and processing

A Vikram, J Woolston, A Sulakvelidze - Current issues in molecular …, 2021 - mdpi.com
Bacteriophages, or phages, are one of the most–if not the most–ubiquitous organisms on
Earth. Interest in various practical applications of bacteriophages has been gaining …

Next generation sequencing approaches to evaluate water and wastewater quality

E Garner, BC Davis, E Milligan, MF Blair, I Keenum… - Water Research, 2021 - Elsevier
The emergence of next generation sequencing (NGS) is revolutionizing the potential to
address complex microbiological challenges in the water industry. NGS technologies can …

A review on the applications and recent advances in environmental DNA (eDNA) metagenomics

D Garlapati, B Charankumar, K Ramu… - … Science and Bio …, 2019 - Springer
Progressions accomplished in the field of molecular biology amid the most recent decade
has changed the way in which we contemplate biodiversity on earth. Together with the …

Environmental DNA/RNA for pathogen and parasite detection, surveillance, and ecology

D Bass, KW Christison, GD Stentiford, LSJ Cook… - Trends in …, 2023 - cell.com
Detection of pathogens, parasites, and other symbionts in environmental samples via
eDNA/eRNA (collectively eNA) is an increasingly important source of information about their …

Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples

G Lear, I Dickie, J Banks, S Boyer, HL Buckley… - New Zealand Journal of …, 2018 - JSTOR
Advances in the sequencing of DNA extracted from media such as soil and water offer huge
opportunities for biodiversity monitoring and assessment, particularly where the collection or …

A framework for the evaluation of biosecurity, commercial, regulatory, and scientific impacts of plant viruses and viroids identified by NGS technologies

S Massart, T Candresse, J Gil, C Lacomme… - Frontiers in …, 2017 - frontiersin.org
Recent advances in high-throughput sequencing technologies and bioinformatics have
generated huge new opportunities for discovering and diagnosing plant viruses and viroids …

Coming-of-age characterization of soil viruses: a user's guide to virus isolation, detection within metagenomes, and viromics

G Trubl, P Hyman, S Roux, ST Abedon - Soil Systems, 2020 - mdpi.com
The study of soil viruses, though not new, has languished relative to the study of marine
viruses. This is particularly due to challenges associated with separating virions from …

eDNA as a tool for identifying freshwater species in sustainable forestry: A critical review and potential future applications

AA Coble, CA Flinders, JA Homyack… - Science of the Total …, 2019 - Elsevier
Environmental DNA (eDNA) is an emerging biological monitoring tool that can aid in
assessing the effects of forestry and forest manufacturing activities on biota. Monitoring taxa …

Differential rhythmicity: detecting altered rhythmicity in biological data

PF Thaben, PO Westermark - Bioinformatics, 2016 - academic.oup.com
Motivation Biological rhythms, such as rhythms in gene expression controlled by the cell
cycle or the circadian clock, are important in cell physiology. A common type of experiment …

[HTML][HTML] Viromics and infectivity analysis reveal the release of infective plant viruses from wastewater into the environment

K Bačnik, D Kutnjak, A Pecman, N Mehle, MT Žnidarič… - Water research, 2020 - Elsevier
Viruses represent one of the most important threats to agriculture. Several viral families
include highly stable pathogens, which remain infective and can be transported long …