Regulation of gene expression by cis-acting long non-coding RNAs
N Gil, I Ulitsky - Nature Reviews Genetics, 2020 - nature.com
Long non-coding RNAs (lncRNAs) are diverse transcription products emanating from
thousands of loci in mammalian genomes. Cis-acting lncRNAs, which constitute a …
thousands of loci in mammalian genomes. Cis-acting lncRNAs, which constitute a …
A mechanistic view of long noncoding RNAs in cancer
L Winkler, N Dimitrova - Wiley Interdisciplinary Reviews: RNA, 2022 - Wiley Online Library
Long noncoding RNAs (lncRNAs) have emerged as important modulators of a wide range of
biological processes in normal and disease states. In particular, lncRNAs have garnered …
biological processes in normal and disease states. In particular, lncRNAs have garnered …
Evaluation of deep learning in non-coding RNA classification
Non-coding (nc) RNA plays a vital role in biological processes and has been associated
with diseases such as cancer. Classification of ncRNAs is necessary for understanding the …
with diseases such as cancer. Classification of ncRNAs is necessary for understanding the …
A genome-wide long noncoding RNA CRISPRi screen identifies PRANCR as a novel regulator of epidermal homeostasis
Genome-wide association studies indicate that many disease susceptibility regions reside in
non-protein-coding regions of the genome. Long noncoding RNAs (lncRNAs) are a major …
non-protein-coding regions of the genome. Long noncoding RNAs (lncRNAs) are a major …
Reverse-genetics studies of lncRNAs—what we have learnt and paths forward
F Gao, Y Cai, P Kapranov, D Xu - Genome biology, 2020 - Springer
Long non-coding RNAs (lncRNAs) represent a major fraction of the transcriptome in
multicellular organisms. Although a handful of well-studied lncRNAs are broadly recognized …
multicellular organisms. Although a handful of well-studied lncRNAs are broadly recognized …
Regulation of CHD2 expression by the Chaserr long noncoding RNA gene is essential for viability
A Rom, L Melamed, N Gil, MJ Goldrich, R Kadir… - Nature …, 2019 - nature.com
Chromodomain helicase DNA binding protein 2 (Chd2) is a chromatin remodeller implicated
in neurological disease. Here we show that Chaserr, a highly conserved long noncoding …
in neurological disease. Here we show that Chaserr, a highly conserved long noncoding …
Genetic determinants of survival in progressive supranuclear palsy: a genome-wide association study
Background The genetic basis of variation in the progression of primary tauopathies has not
been determined. We aimed to identify genetic determinants of survival in progressive …
been determined. We aimed to identify genetic determinants of survival in progressive …
Single-cell causal network inferred by cross-mapping entropy
Gene regulatory networks (GRNs) reveal the complex molecular interactions that govern cell
state. However, it is challenging for identifying causal relations among genes due to noisy …
state. However, it is challenging for identifying causal relations among genes due to noisy …
Mammalian RNA decay pathways are highly specialized and widely linked to translation
RNA decay is crucial for mRNA turnover and surveillance and misregulated in many
diseases. This complex system is challenging to study, particularly in mammals, where it …
diseases. This complex system is challenging to study, particularly in mammals, where it …
TENET: gene network reconstruction using transfer entropy reveals key regulatory factors from single cell transcriptomic data
Accurate prediction of gene regulatory rules is important towards understanding of cellular
processes. Existing computational algorithms devised for bulk transcriptomics typically …
processes. Existing computational algorithms devised for bulk transcriptomics typically …