Next‐generation sequencing technologies for environmental DNA research

S Shokralla, JL Spall, JF Gibson… - Molecular …, 2012 - Wiley Online Library
Since 2005, advances in next‐generation sequencing technologies have revolutionized
biological science. The analysis of environmental DNA through the use of specific gene …

A field guide to whole‐genome sequencing, assembly and annotation

R Ekblom, JBW Wolf - Evolutionary applications, 2014 - Wiley Online Library
Genome sequencing projects were long confined to biomedical model organisms and
required the concerted effort of large consortia. Rapid progress in high‐throughput …

The Genome 10K Project: a way forward

KP Koepfli, B Paten… - Annu. Rev. Anim …, 2015 - annualreviews.org
The Genome 10K Project was established in 2009 by a consortium of biologists and
genome scientists determined to facilitate the sequencing and analysis of the complete …

Reference genomes for conservation

S Paez, RHS Kraus, B Shapiro, MTP Gilbert, ED Jarvis… - Science, 2022 - science.org
As of 2022, the International Union for Conservation of Nature (IUCN) Red List estimates
that more than 32% of fungal, plant, and animal species are threatened with extinction. This …

Epithelial sodium channel (ENaC) family: Phylogeny, structure–function, tissue distribution, and associated inherited diseases

I Hanukoglu, A Hanukoglu - Gene, 2016 - Elsevier
The epithelial sodium channel (ENaC) is composed of three homologous subunits and
allows the flow of Na+ ions across high resistance epithelia, maintaining body salt and water …

Emerging infectious diseases of wildlife: a critical perspective

DM Tompkins, S Carver, ME Jones, M Krkošek… - Trends in …, 2015 - cell.com
We review the literature to distinguish reports of vertebrate wildlife disease emergence with
sufficient evidence, enabling a robust assessment of emergence drivers. For potentially …

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

KR Bradnam, JN Fass, A Alexandrov, P Baranay… - …, 2013 - academic.oup.com
Background The process of generating raw genome sequence data continues to become
cheaper, faster, and more accurate. However, assembly of such data into high-quality …

Genomic flatlining in the endangered island fox

JA Robinson, D Ortega-Del Vecchyo, Z Fan, BY Kim… - Current Biology, 2016 - cell.com
Genetic studies of rare and endangered species often focus on defining and preserving
genetically distinct populations, especially those having unique adaptations [1, 2]. Much less …

The evolution of two transmissible cancers in Tasmanian devils

MR Stammnitz, K Gori, YM Kwon, E Harry, FJ Martin… - Science, 2023 - science.org
Tasmanian devils have spawned two transmissible cancer lineages, named devil facial
tumor 1 (DFT1) and devil facial tumor 2 (DFT2). We investigated the genetic diversity and …

Museum genomics reveals the rapid decline and extinction of Australian rodents since European settlement

E Roycroft, AJ MacDonald, C Moritz… - Proceedings of the …, 2021 - National Acad Sciences
Australia has the highest historically recorded rate of mammalian extinction in the world, with
34 terrestrial species declared extinct since European colonization in 1788. Among …