Regulation by transcription factors in bacteria: beyond description

E Balleza, LN Lopez-Bojorquez… - FEMS microbiology …, 2008 - academic.oup.com
Transcription is an essential step in gene expression and its understanding has been one of
the major interests in molecular and cellular biology. By precisely tuning gene expression …

Comparative genomic reconstruction of transcriptional regulatory networks in bacteria

DA Rodionov - Chemical reviews, 2007 - ACS Publications
Microorganisms in most ecological niches are constantly exposed to variations of many
environmental factors, including temperature; oxygen, nutrient, and water availability; …

[HTML][HTML] Fatty acid overproduction by gut commensal microbiota exacerbates obesity

T Takeuchi, K Kameyama, E Miyauchi, Y Nakanishi… - Cell metabolism, 2023 - cell.com
Although recent studies have highlighted the impact of gut microbes on the progression of
obesity and its comorbidities, it is not fully understood how these microbes promote these …

PRODORIC: state-of-the-art database of prokaryotic gene regulation

CA Dudek, D Jahn - Nucleic acids research, 2022 - academic.oup.com
PRODORIC is worldwide one of the largest collections of prokaryotic transcription factor
binding sites from multiple bacterial sources with corresponding interpretation and …

The third pillar of bacterial signal transduction: classification of the extracytoplasmic function (ECF) σ factor protein family

A Staroń, HJ Sofia, S Dietrich, LE Ulrich… - Molecular …, 2009 - Wiley Online Library
The ability of a bacterial cell to monitor and adaptively respond to its environment is crucial
for survival. After one‐and two‐component systems, extracytoplasmic function (ECF) σ …

CyanoGate: a modular cloning suite for engineering cyanobacteria based on the plant MoClo syntax

R Vasudevan, GAR Gale, AA Schiavon… - Plant …, 2019 - academic.oup.com
Recent advances in synthetic biology research have been underpinned by an exponential
increase in available genomic information and a proliferation of advanced DNA assembly …

The complete genome sequence of the algal symbiont Dinoroseobacter shibae: a hitchhiker's guide to life in the sea

I Wagner-Döbler, B Ballhausen, M Berger… - The ISME …, 2010 - academic.oup.com
Dinoroseobacter shibae DFL12T, a member of the globally important marine Roseobacter
clade, comprises symbionts of cosmopolitan marine microalgae, including toxic …

Discovery of a super-strong promoter enables efficient production of heterologous proteins in cyanobacteria

J Zhou, H Zhang, H Meng, Y Zhu, G Bao, Y Zhang… - Scientific reports, 2014 - nature.com
Cyanobacteria are oxygenic photosynthetic prokaryotes that play important roles in the
global carbon cycle. Recently, engineered cyanobacteria capable of producing various …

Genes essential for morphological development and antibiotic production in Streptomyces coelicolor are targets of BldD during vegetative growth

CD Den Hengst, NT Tran, MJ Bibb… - Molecular …, 2010 - Wiley Online Library
BldD is a transcriptional regulator essential for morphological development and antibiotic
production in Streptomyces coelicolor. Here we identify the BldD regulon by means of …

Regulation of LiaRS-Dependent Gene Expression in Bacillus subtilis: Identification of Inhibitor Proteins, Regulator Binding Sites, and Target Genes of a Conserved …

S Jordan, A Junker, JD Helmann… - Journal of …, 2006 - Am Soc Microbiol
The regulatory network of the cell envelope stress response in Bacillus subtilis involves both
extracytoplasmic function σ-factors and two-component signal transducing systems. One …