[HTML][HTML] Structure-preserving Gaussian denoising of FIB-SEM volumes

V González-Ruiz, MR Fernández-Fernández… - Ultramicroscopy, 2023 - Elsevier
Abstract FIB-SEM (Focused Ion Beam-Scanning Electron Microscopy) is an imaging
technique that allows 3D ultrastructural analysis of cells and tissues at the nanoscale. The …

Disruption of the mitochondrial network in a mouse model of Huntington's disease visualized by in-tissue multiscale 3D electron microscopy

E Martin-Solana, L Casado-Zueras, TE Torres… - Acta Neuropathologica …, 2024 - Springer
Huntington's disease (HD) is an inherited neurodegenerative disorder caused by an
expanded CAG repeat in the coding sequence of huntingtin protein. Initially, it predominantly …

APFlowNet: An inter-layer interpolation approach for soil CT images based on CNN and bidirectional optical flow

H Bai, X Zhou, Y Zhao, Y Zhao, Q Han - Soil and Tillage Research, 2024 - Elsevier
Computed tomography (CT) is an effective technique for characterizing the internal structure
of soil. However, the voxels in CT images obtained by majority of medical scanners exhibit …

Computational methods for three-dimensional electron microscopy (3DEM)

JJ Fernández, A Martínez-Sánchez - Computer Methods and …, 2022 - digital.csic.es
Revolutionary technical and computational advancements in the last decade have
established three-dimensional electron microscopy (3DEM) as an essential structural tool for …

Nucleus segmentation of white blood cells in blood smear images by modeling the pixels' intensities as a set of three Gaussian distributions

F Garcia-Lamont, A Lopez-Chau, J Cervantes… - Medical & Biological …, 2024 - Springer
The precise segmentation of white blood cells (WBCs) within blood smear images is a
significant challenge with implications for both medical research and image processing. Of …

Diffuseir: Diffusion models for isotropic reconstruction of 3d microscopic images

M Pan, Y Gan, F Zhou, J Liu, Y Zhang, A Wang… - … Conference on Medical …, 2023 - Springer
Three-dimensional microscopy is often limited by anisotropic spatial resolution, resulting in
lower axial resolution than lateral resolution. Current State-of-The-Art (SoTA) isotropic …

[HTML][HTML] FlowDenoising: Structure-preserving denoising in 3D electron microscopy (3DEM)

V González-Ruiz, JJ Fernández - SoftwareX, 2023 - Elsevier
FlowDenoising is a software tool that implements an adaptive Gaussian denoising filter that
preserves visually appreciable structures in volumes of 3D electron microscopy (3DEM). It …

Deep learning-based identification of sub-nuclear structures in FIB-SEM images

N Gupta, EJ Roberts, S Pang, CS Xu, HF Hess… - arXiv preprint arXiv …, 2022 - arxiv.org
Three-dimensional volumetric imaging of cells allows for in situ visualization, thus
preserving contextual insights into cellular processes. Despite recent advances in machine …

SEM3De: image restoration for FIB-SEM

RH Serir, A Deliot, C Kizilyaprak… - Bioinformatics …, 2023 - academic.oup.com
Abstract Motivation FIB-SEM (Focused Ion Beam—Scanning Electron Microscopy) is a
technique to generate 3D images of samples up to several microns in depth. The principle is …

SPECK: an unsupervised learning approach for cell surface receptor abundance estimation for single-cell RNA-sequencing data

A Javaid, HR Frost - europepmc.org
The rapid development of single-cell transcriptomics has revolutionized the study of complex
tissues. Single-cell RNA-sequencing (scRNA-seq) can profile tens-of-thousands of …