[HTML][HTML] ProbABEL package for genome-wide association analysis of imputed data

YS Aulchenko, MV Struchalin, CM van Duijn - BMC bioinformatics, 2010 - Springer
Background Over the last few years, genome-wide association (GWA) studies became a tool
of choice for the identification of loci associated with complex traits. Currently, imputed single …

Software engineering the mixed model for genome-wide association studies on large samples

Z Zhang, ES Buckler, TM Casstevens… - Briefings in …, 2009 - academic.oup.com
Mixed models improve the ability to detect phenotype-genotype associations in the
presence of population stratification and multiple levels of relatedness in genome-wide …

Dissection of Genetic Factors Modulating Fetal Growth in Cattle Indicates a Substantial Role of the Non-SMC Condensin I Complex, Subunit G (NCAPG) Gene

A Eberlein, A Takasuga, K Setoguchi, R Pfuhl… - Genetics, 2009 - academic.oup.com
The increasing evidence of fetal developmental effects on postnatal life, the still unknown
fetal growth mechanisms impairing offspring generated by somatic nuclear transfer …

Evidence for pleiotropism and recent selection in the PLAG1 region in Australian Beef cattle

MRS Fortes, K Kemper, S Sasazaki, A Reverter… - Animal …, 2013 - Wiley Online Library
A putative functional mutation (rs109231213) near PLAG 1 (BTA 14) associated with stature
was studied in beef cattle. Data from 8199 B os taurus, B os indicus and T ropical C …

Effects of bovine fatty acid synthase, stearoyl-coenzyme A desaturase, sterol regulatory element-binding protein 1, and growth hormone gene polymorphisms on fatty …

T Matsuhashi, S Maruyama, Y Uemoto… - Journal of Animal …, 2011 - academic.oup.com
The quality of fat is an important factor in defining the quality of meat. Fat quality is
determined by the composition of fatty acids. Among lipid metabolism-related genes …

Finding genes for economically important traits: Brahman cattle puberty

MRS Fortes, SA Lehnert, S Bolormaa… - Animal Production …, 2012 - CSIRO Publishing
Age at puberty is an important component of reproductive performance in beef cattle
production systems. Brahman cattle are typically late-pubertal relative to Bos taurus cattle …

Fine mapping of porcine chromosome 6 QTL and LEPR effects on body composition in multiple generations of an Iberian by Landrace intercross

C Ovilo, A Fernández, JL Noguera, C Barragán… - Genetics …, 2005 - cambridge.org
The leptin receptor gene (LEPR) is a candidate for traits related to growth and body
composition, and is located on SSC6 in a region where fatness and meat composition …

Genetic architecture of tameness in a rat model of animal domestication

FW Albert, O Carlborg, I Plyusnina, F Besnier… - Genetics, 2009 - academic.oup.com
A common feature of domestic animals is tameness—ie., they tolerate and are unafraid of
human presence and handling. To gain insight into the genetic basis of tameness and …

[HTML][HTML] Qxpak. 5: old mixed model solutions for new genomics problems

M Pérez-Enciso, I Misztal - BMC bioinformatics, 2011 - Springer
Background Mixed models have a long and fruitful history in statistics. They are pertinent to
genomics problems because they are highly versatile, accommodating a wide variety of …

Candidate genes associated with testicular development, sperm quality, and hormone levels of inhibin, luteinizing hormone, and insulin-like growth factor 1 in …

MRS Fortes, A Reverter, RJ Hawken… - Biology of …, 2012 - academic.oup.com
Bull fertility is an important target for genetic improvement, and early prediction using genetic
markers is therefore a goal for livestock breeding. We performed genome-wide association …