The untranslated regions of mRNAs in cancer

SL Schuster, AC Hsieh - Trends in cancer, 2019 - cell.com
The 5′ and 3′ untranslated regions (UTRs) regulate crucial aspects of post-transcriptional
gene regulation that are necessary for the maintenance of cellular homeostasis. When these …

Alternative polyadenylation: methods, findings, and impacts

W Chen, Q Jia, Y Song, H Fu, G Wei… - Genomics, Proteomics …, 2017 - academic.oup.com
Alternative polyadenylation (APA), a phenomenon that RNA molecules with different 3′
ends originate from distinct polyadenylation sites of a single gene, is emerging as a …

Drought induces epitranscriptome and proteome changes in stem-differentiating xylem of Populus trichocarpa

Y Gao, X Liu, Y Jin, J Wu, S Li, Y Li, B Chen… - Plant …, 2022 - academic.oup.com
Understanding gene expression and regulation requires insights into RNA transcription,
processing, modification, and translation. However, the relationship between the …

Maternal exercise via exerkine apelin enhances brown adipogenesis and prevents metabolic dysfunction in offspring mice

JS Son, L Zhao, Y Chen, K Chen, SA Chae… - Science …, 2020 - science.org
The obesity rate is rapidly increasing, which has been attributed to lack of exercise and
excessive energy intake. Here, we found a previously unidentified explanation, due to lack …

Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data

S Bryce-Smith, D Burri, MR Gazzara, CJ Herrmann… - RNA, 2023 - rnajournal.cshlp.org
The tremendous rate with which data is generated and analysis methods emerge makes it
increasingly difficult to keep track of their domain of applicability, assumptions, limitations …

Maternal exercise intergenerationally drives muscle-based thermogenesis via activation of apelin-AMPK signaling

JS Son, SA Chae, L Zhao, H Wang, JM de Avila… - …, 2022 - thelancet.com
Background Sarcolipin and uncoupling protein 3 (UCP3) mediate muscle-based non-
shivering thermogenesis (NST) to improve metabolic homeostasis. The impacts of maternal …

Maternal inactivity programs skeletal muscle dysfunction in offspring mice by attenuating apelin signaling and mitochondrial biogenesis

JS Son, SA Chae, H Wang, Y Chen, AB Iniguez… - Cell reports, 2020 - cell.com
Although maternal exercise (ME) becomes increasingly uncommon, the effects of ME on
offspring muscle metabolic health remain largely undefined. Maternal mice are subject to …

Differential alternative polyadenylation response to high-fat diet between polygenic obese and healthy lean mice

Š Mikec, S Horvat, H Wang, J Michal, T Kunej… - … and biophysical research …, 2023 - Elsevier
Obesity's complex etiology due to the interplay of environment and genetics makes it a more
challenging research and health problem. Some of the contributing genetic factors that have …

[HTML][HTML] A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats

TV de Jong, Y Pan, P Rastas, D Munro, M Tutaj, H Akil… - Cell Genomics, 2024 - cell.com
The seventh iteration of the reference genome assembly for Rattus norvegicus—mRatBN7.
2—corrects numerous misplaced segments and reduces base-level errors by approximately …

Enhanced bovine genome annotation through integration of transcriptomics and epi-transcriptomics datasets facilitates genomic biology

H Beiki, BM Murdoch, CA Park, C Kern… - …, 2024 - academic.oup.com
Background The accurate identification of the functional elements in the bovine genome is a
fundamental requirement for high-quality analysis of data informing both genome biology …