Updated review of advances in microRNAs and complex diseases: experimental results, databases, webservers and data fusion

L Huang, L Zhang, X Chen - Briefings in bioinformatics, 2022 - academic.oup.com
MicroRNAs (miRNAs) are gene regulators involved in the pathogenesis of complex
diseases such as cancers, and thus serve as potential diagnostic markers and therapeutic …

microRNA‐based diagnostic and therapeutic applications in cancer medicine

LF Sempere, AS Azmi, A Moore - Wiley Interdisciplinary …, 2021 - Wiley Online Library
It has been almost two decades since the first link between microRNAs and cancer was
established. In the ensuing years, this abundant class of short noncoding regulatory RNAs …

T-cell trans-synaptic vesicles are distinct and carry greater effector content than constitutive extracellular vesicles

PF Céspedes, A Jainarayanan… - Nature …, 2022 - nature.com
The immunological synapse is a molecular hub that facilitates the delivery of three activation
signals, namely antigen, costimulation/corepression and cytokines, from antigen-presenting …

isomiRdb: microRNA expression at isoform resolution

E Aparicio-Puerta, P Hirsch, GP Schmartz… - Nucleic Acids …, 2023 - academic.oup.com
A significant fraction of mature miRNA transcripts carries sequence and/or length variations,
termed isomiRs. IsomiRs are differentially abundant in cell types, tissues, body fluids or …

Integrated miRNA-Seq and mRNA-Seq study to identify miRNAs associated with Alzheimer's disease using post-mortem brain tissue samples

QS Li, D Cai - Frontiers in neuroscience, 2021 - frontiersin.org
Alzheimer's disease (AD), the leading form of dementia, is associated with abnormal tau and
β-amyloid accumulation in the brain. We conducted a miRNA-seq study to identify miRNAs …

Reassessment of miRNA variant (isomiRs) composition by small RNA sequencing

C Gómez-Martín, E Aparicio-Puerta… - Cell Reports …, 2023 - cell.com
IsomiRs, sequence variants of mature microRNAs, are usually detected and quantified using
high-throughput sequencing. Many examples of their biological relevance have been …

Unraveling the Potential of miRNAs from CSCs as an Emerging Clinical Tool for Breast Cancer Diagnosis and Prognosis

R Nogueras Pérez, N Heredia-Nicolás… - International Journal of …, 2023 - mdpi.com
Breast cancer (BC) is the most diagnosed cancer in women and the second most common
cancer globally. Significant advances in BC research have led to improved early detection …

sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms

E Aparicio-Puerta, C Gómez-Martín… - Nucleic acids …, 2022 - academic.oup.com
Abstract The NCBI Sequence Read Archive currently hosts microRNA sequencing data for
over 800 different species, evidencing the existence of a broad taxonomic distribution in the …

Interferon-alpha decreases cancer stem cell properties and modulates exosomes in malignant melanoma

MB García-Ortega, E Aparicio, C Griñán-Lisón… - Cancers, 2023 - mdpi.com
Simple Summary Malignant melanoma spreads to other organs and is resistant in part due
to the presence of cancer stem cell subpopulations (CSCs). To combat these aggressive …

Genome-wide analysis of microRNA expression profile in roots and leaves of three wheat cultivars under water and drought conditions

C Gómez-Martín, H Zhou, JM Medina… - Biomolecules, 2023 - mdpi.com
Wheat is one of the most important food sources on Earth. MicroRNAs (miRNAs) play
important roles in wheat productivity. To identify wheat miRNAs as well as their expression …