Methods to detect selection in populations with applications to the human

M Kreitman - Annual review of genomics and human genetics, 2000 - annualreviews.org
The development of statistical tests of natural selection at the DNA level in population
samples has been ongoing for the past 13 years. The current state of the field is reviewed …

Applications of selective neutrality tests to molecular ecology

MJ Ford - Molecular Ecology, 2002 - Wiley Online Library
This paper reviews how statistical tests of neutrality have been used to address questions in
molecular ecology are reviewed. The work consists of four major parts: a brief review of the …

Hitchhiking under positive Darwinian selection

JC Fay, CI Wu - Genetics, 2000 - academic.oup.com
Positive selection can be inferred from its effect on linked neutral variation. In the restrictive
case when there is no recombination, all linked variation is removed. If recombination is …

Speciation through sensory drive in cichlid fish

O Seehausen, Y Terai, IS Magalhaes, KL Carleton… - Nature, 2008 - nature.com
Theoretically, divergent selection on sensory systems can cause speciation through sensory
drive. However, empirical evidence is rare and incomplete. Here we demonstrate sensory …

DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis.

J Rozas, R Rozas - Bioinformatics (Oxford, England), 1999 - academic.oup.com
DnaSP is a Windows integrated software package for the analysis of the DNA polymorphism
from nucleotide sequence data. DnaSP version 3 incorporates several methods for …

Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis

EA Stahl, G Dwyer, R Mauricio, M Kreitman… - Nature, 1999 - nature.com
The co-evolutionary 'arms race'is a widely accepted model for the evolution of host–
pathogen interactions. This model predicts that variation for disease resistance will be …

DNA Polymorphism at the FRIGIDA Gene in Arabidopsis thaliana: Extensive Nonsynonymous Variation Is Consistent with Local Selection for Flowering Time

V Le Corre, F Roux, X Reboud - Molecular biology and evolution, 2002 - academic.oup.com
FRIGIDA (FRI) is a major gene involved in the regulation of flowering time in Arabidopsis
thaliana. Nucleotide variation at this gene was investigated by sequencing 25 field ecotypes …

Divergent selection on opsins drives incipient speciation in Lake Victoria cichlids

Y Terai, O Seehausen, T Sasaki, K Takahashi… - PLoS …, 2006 - journals.plos.org
Divergent natural selection acting on ecological traits, which also affect mate choice, is a key
element of ecological speciation theory, but has not previously been demonstrated at the …

Natural Selection for Polymorphism in the Disease Resistance Gene Rps2 of Arabidopsis thaliana

R Mauricio, EA Stahl, T Korves, D Tian, M Kreitman… - Genetics, 2003 - academic.oup.com
Pathogen resistance is an ecologically important phenotype increasingly well understood at
the molecular genetic level. In this article, we examine levels of avrRpt2-dependent …

Inferring the fitness effects of DNA mutations from polymorphism and divergence data: statistical power to detect directional selection under stationarity and free …

H Akashi - Genetics, 1999 - academic.oup.com
The fitness effects of classes of DNA mutations can be inferred from patterns of nucleotide
variation. A number of studies have attributed differences in levels of polymorphism and …