An introduction to biological NMR spectroscopy

D Marion - Molecular & Cellular Proteomics, 2013 - ASBMB
NMR spectroscopy is a powerful tool for biologists interested in the structure, dynamics, and
interactions of biological macromolecules. This review aims at presenting in an accessible …

ACPYPE-Antechamber python parser interface

AW Sousa da Silva, WF Vranken - BMC research notes, 2012 - Springer
Abstract Background ACPYPE (or AnteChamber PYthon Parser interfacE) is a wrapper
script around the ANTECHAMBER software that simplifies the generation of small molecule …

Open source libraries and frameworks for biological data visualisation: A guide for developers

R Wang, Y Perez‐Riverol, H Hermjakob… - …, 2015 - Wiley Online Library
Recent advances in high‐throughput experimental techniques have led to an exponential
increase in both the size and the complexity of the data sets commonly studied in biology …

WeNMR: structural biology on the grid

TA Wassenaar, M Van Dijk, N Loureiro-Ferreira… - Journal of Grid …, 2012 - Springer
Abstract The WeNMR (http://www. wenmr. eu) project is a European Union funded
international effort to streamline and automate analysis of Nuclear Magnetic Resonance …

Nucleosomal DNA binding drives the recognition of H3K36-methylated nucleosomes by the PSIP1-PWWP domain

R van Nuland, FMA van Schaik, M Simonis… - Epigenetics & …, 2013 - Springer
Background Recognition of histone modifications by specialized protein domains is a key
step in the regulation of DNA-mediated processes like gene transcription. The structural …

Recommendations of the wwPDB NMR validation task force

GT Montelione, M Nilges, A Bax, P Güntert, T Herrmann… - Structure, 2013 - cell.com
As methods for analysis of biomolecular structure and dynamics using nuclear magnetic
resonance spectroscopy (NMR) continue to advance, the resulting 3D structures, chemical …

The molecular basis of subtype selectivity of human kinin G-protein-coupled receptors

L Joedicke, J Mao, G Kuenze, C Reinhart… - Nature chemical …, 2018 - nature.com
G-protein-coupled receptors (GPCRs) are the most important signal transducers in higher
eukaryotes. Despite considerable progress, the molecular basis of subtype-specific ligand …

Tandem hnRNP A1 RNA recognition motifs act in concert to repress the splicing of survival motor neuron exon 7

I Beusch, P Barraud, A Moursy, A Clery, FHT Allain - Elife, 2017 - elifesciences.org
HnRNP A1 regulates many alternative splicing events by the recognition of splicing silencer
elements. Here, we provide the solution structures of its two RNA recognition motifs (RRMs) …

The HicA toxin from Burkholderia pseudomallei has a role in persister cell formation

A Butt, VA Higman, C Williams, MP Crump… - Biochemical …, 2014 - portlandpress.com
TA (toxin–antitoxin) systems are widely distributed amongst bacteria and are associated with
the formation of antibiotic tolerant (persister) cells that may have involvement in chronic and …

Structure, dynamics and RNA binding of the multi-domain splicing factor TIA-1

I Wang, J Hennig, PKA Jagtap, M Sonntag… - Nucleic acids …, 2014 - academic.oup.com
Alternative pre-messenger ribonucleic acid (pre-mRNA) splicing is an essential process in
eukaryotic gene regulation. The T-cell intracellular antigen-1 (TIA-1) is an apoptosis …