Increased functional protein expression using nucleotide sequence features enriched in highly expressed genes in zebrafish
EJ Horstick, DC Jordan, SA Bergeron… - Nucleic acids …, 2015 - academic.oup.com
Many genetic manipulations are limited by difficulty in obtaining adequate levels of protein
expression. Bioinformatic and experimental studies have identified nucleotide sequence …
expression. Bioinformatic and experimental studies have identified nucleotide sequence …
In with the old, in with the new: the promiscuity of the duplication process engenders diverse pathways for novel gene creation
V Katju - International Journal of Evolutionary Biology, 2012 - Wiley Online Library
The gene duplication process has exhibited far greater promiscuity in the creation of
paralogs with novel exon‐intron structures than anticipated even by Ohno. In this paper I …
paralogs with novel exon‐intron structures than anticipated even by Ohno. In this paper I …
Transcriptome analysis of pancreatic cells across distant species highlights novel important regulator genes
E Tarifeño-Saldivia, A Lavergne, A Bernard… - BMC biology, 2017 - Springer
Background Defining the transcriptome and the genetic pathways of pancreatic cells is of
great interest for elucidating the molecular attributes of pancreas disorders such as diabetes …
great interest for elucidating the molecular attributes of pancreas disorders such as diabetes …
Population genetic diversity in zebrafish lines
Toxicological and pharmacological researchers have seized upon the many benefits of
zebrafish, including the short generation time, well-characterized development, and early …
zebrafish, including the short generation time, well-characterized development, and early …
The reference genome of Macropodus opercularis (the paradise fish)
E Fodor, J Okendo, N Szabó, K Szabó, D Czimer… - Scientific data, 2024 - nature.com
Amongst fishes, zebrafish (Danio rerio) has gained popularity as a model system over most
other species and while their value as a model is well documented, their usefulness is …
other species and while their value as a model is well documented, their usefulness is …
The Most Developmentally Truncated Fishes Show Extensive Hox Gene Loss and Miniaturized Genomes
The world's smallest fishes belong to the genus Paedocypris. These miniature fishes are
endemic to an extreme habitat: the peat swamp forests in Southeast Asia, characterized by …
endemic to an extreme habitat: the peat swamp forests in Southeast Asia, characterized by …
Intron size minimisation in teleosts
LM Jakt, A Dubin, SD Johansen - BMC genomics, 2022 - Springer
Background Spliceosomal introns are parts of primary transcripts that are removed by RNA
splicing. Although introns apparently do not contribute to the function of the mature …
splicing. Although introns apparently do not contribute to the function of the mature …
Hybrid genome assembly and annotation of Danionella translucida
Studying neuronal circuits at cellular resolution is very challenging in vertebrates due to the
size and optical turbidity of their brains. Danionella translucida, a close relative of zebrafish …
size and optical turbidity of their brains. Danionella translucida, a close relative of zebrafish …
Advances in vertebrate (cyto) genomics shed new light on fish compositional genome evolution
D Matoulek, B Ježek, M Vohnoutová, R Symonová - Genes, 2023 - mdpi.com
Cytogenetic and compositional studies considered fish genomes rather poor in guanine-
cytosine content (GC%) because of a putative “sharp increase in genic GC% during the …
cytosine content (GC%) because of a putative “sharp increase in genic GC% during the …
The genetic map of goldfish (Carassius auratus) provided insights to the divergent genome evolutions in the Cyprinidae family
A high-density linkage map of goldfish (Carassius auratus) was constructed using RNA-
sequencing. This map consists of 50 linkage groups with 8,521 SNP markers and an …
sequencing. This map consists of 50 linkage groups with 8,521 SNP markers and an …