Literature mining for the biologist: from information retrieval to biological discovery
For the average biologist, hands-on literature mining currently means a keyword search in
PubMed. However, methods for extracting biomedical facts from the scientific literature have …
PubMed. However, methods for extracting biomedical facts from the scientific literature have …
Text-mining solutions for biomedical research: enabling integrative biology
D Rebholz-Schuhmann, A Oellrich… - Nature Reviews …, 2012 - nature.com
In response to the unbridled growth of information in literature and biomedical databases,
researchers require efficient means of handling and extracting information. As well as …
researchers require efficient means of handling and extracting information. As well as …
Linking genes to literature: text mining, information extraction, and retrieval applications for biology
Efficient access to information contained in online scientific literature collections is essential
for life science research, playing a crucial role from the initial stage of experiment planning …
for life science research, playing a crucial role from the initial stage of experiment planning …
[图书][B] Biomedical natural language processing
KB Cohen, D Demner-Fushman - 2014 - jbe-platform.com
Biomedical Natural Language Processing is a comprehensive tour through the classic and
current work in the field. It discusses all subjects from both a rule-based and a machine …
current work in the field. It discusses all subjects from both a rule-based and a machine …
Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011
We present the preparation, resources, results and analysis of three tasks of the BioNLP
Shared Task 2011: the main tasks on Infectious Diseases (ID) and Epigenetics and Post …
Shared Task 2011: the main tasks on Infectious Diseases (ID) and Epigenetics and Post …
Improving chemical disease relation extraction with rich features and weakly labeled data
Background Due to the importance of identifying relations between chemicals and diseases
for new drug discovery and improving chemical safety, there has been a growing interest in …
for new drug discovery and improving chemical safety, there has been a growing interest in …
Construction of an annotated corpus to support biomedical information extraction
Abstract Background Information Extraction (IE) is a component of text mining that facilitates
knowledge discovery by automatically locating instances of interesting biomedical events …
knowledge discovery by automatically locating instances of interesting biomedical events …
OpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and …
Background Information extraction (IE) efforts are widely acknowledged to be important in
harnessing the rapid advance of biomedical knowledge, particularly in areas where …
harnessing the rapid advance of biomedical knowledge, particularly in areas where …
Analysis of biological processes and diseases using text mining approaches
A number of biomedical text mining systems have been developed to extract biologically
relevant information directly from the literature, complementing bioinformatics methods in the …
relevant information directly from the literature, complementing bioinformatics methods in the …
The application of systems biology to drug discovery
CR Cho, M Labow, M Reinhardt, J van Oostrum… - Current opinion in …, 2006 - Elsevier
Recent advances in the 'omics' technologies, scientific computing and mathematical
modeling of biological processes have started to fundamentally impact the way we approach …
modeling of biological processes have started to fundamentally impact the way we approach …