Image-based profiling for drug discovery: due for a machine-learning upgrade?

SN Chandrasekaran, H Ceulemans, JD Boyd… - Nature Reviews Drug …, 2021 - nature.com
Image-based profiling is a maturing strategy by which the rich information present in
biological images is reduced to a multidimensional profile, a collection of extracted image …

Applications in image-based profiling of perturbations

JC Caicedo, S Singh, AE Carpenter - Current opinion in biotechnology, 2016 - Elsevier
Highlights•Image-based profiling uses hundreds of measurements of cell morphology from
images.•Samples with similar phenotypes are grouped based on this unbiased, quantitative …

Morphological profiling of small molecules

S Ziegler, S Sievers, H Waldmann - Cell chemical biology, 2021 - cell.com
Profiling approaches such as gene expression or proteome profiling generate small-
molecule bioactivity profiles that describe a perturbed cellular state in a rather unbiased …

Plant-derived antifungal agent poacic acid targets β-1, 3-glucan

JS Piotrowski, H Okada, F Lu, SC Li… - Proceedings of the …, 2015 - National Acad Sciences
A rise in resistance to current antifungals necessitates strategies to identify alternative
sources of effective fungicides. We report the discovery of poacic acid, a potent antifungal …

Morphobase, an encyclopedic cell morphology database, and its use for drug target identification

Y Futamura, M Kawatani, S Kazami, K Tanaka… - Chemistry & biology, 2012 - cell.com
Visual observation is a powerful approach for screening bioactive compounds that can
facilitate the discovery of attractive druggable targets following their chemicobiological …

Systematic exploration of cell morphological phenotypes associated with a transcriptomic query

I Nassiri, MN McCall - Nucleic acids research, 2018 - academic.oup.com
Cell morphological phenotypes, including shape, size, intensity, and texture of cellular
compartments have been shown to change in response to perturbation with small molecule …

Multi-Faceted Systems Biology Approaches Present a Cellular Landscape of Phenolic Compound Inhibition in Saccharomyces cerevisiae

E Fletcher, K Baetz - Frontiers in Bioengineering and Biotechnology, 2020 - frontiersin.org
Synthetic biology has played a major role in engineering microbial cell factories to convert
plant biomass (lignocellulose) to fuels and bioproducts by fermentation. However, the final …

Combined morphological and proteome profiling reveals target-independent impairment of cholesterol homeostasis

T Schneidewind, A Brause, B Schölermann… - Cell Chemical …, 2021 - cell.com
Unbiased profiling approaches are powerful tools for small-molecule target or mode-of-
action deconvolution as they generate a holistic view of the bioactivity space. This is …

Vanillin Inhibits Translation and Induces Messenger Ribonucleoprotein (mRNP) Granule Formation in Saccharomyces cerevisiae: Application and Validation of High …

A Iwaki, S Ohnuki, Y Suga, S Izawa, Y Ohya - PLoS One, 2013 - journals.plos.org
Vanillin, generated by acid hydrolysis of lignocellulose, acts as a potent inhibitor of the
growth of the yeast Saccharomyces cerevisiae. Here, we investigated the cellular processes …

Target identification of small molecules based on chemical biology approaches

Y Futamura, M Muroi, H Osada - Molecular BioSystems, 2013 - pubs.rsc.org
Recently, a phenotypic approach—screens that assess the effects of compounds on cells,
tissues, or whole organisms—has been reconsidered and reintroduced as a complementary …