A field guide to whole‐genome sequencing, assembly and annotation
Genome sequencing projects were long confined to biomedical model organisms and
required the concerted effort of large consortia. Rapid progress in high‐throughput …
required the concerted effort of large consortia. Rapid progress in high‐throughput …
The Genome 10K Project: a way forward
KP Koepfli, B Paten… - Annu. Rev. Anim …, 2015 - annualreviews.org
The Genome 10K Project was established in 2009 by a consortium of biologists and
genome scientists determined to facilitate the sequencing and analysis of the complete …
genome scientists determined to facilitate the sequencing and analysis of the complete …
Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits
INTRODUCTION The ruminants are one of the most successful mammalian lineages,
exhibiting extensive morphological and ecological diversity and containing several key …
exhibiting extensive morphological and ecological diversity and containing several key …
Single-haplotype comparative genomics provides insights into lineage-specific structural variation during cat evolution
The role of structurally dynamic genomic regions in speciation is poorly understood due to
challenges inherent in diploid genome assembly. Here we reconstructed the evolutionary …
challenges inherent in diploid genome assembly. Here we reconstructed the evolutionary …
The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization
Sturgeons seem to be frozen in time. The archaic characteristics of this ancient fish lineage
place it in a key phylogenetic position at the base of the~ 30,000 modern teleost fish …
place it in a key phylogenetic position at the base of the~ 30,000 modern teleost fish …
Giant lungfish genome elucidates the conquest of land by vertebrates
Lungfishes belong to lobe-fined fish (Sarcopterygii) that, in the Devonian
period,'conquered'the land and ultimately gave rise to all land vertebrates, including …
period,'conquered'the land and ultimately gave rise to all land vertebrates, including …
OrthoVenn: a web server for genome wide comparison and annotation of orthologous clusters across multiple species
Y Wang, D Coleman-Derr, G Chen… - Nucleic acids …, 2015 - academic.oup.com
Genome wide analysis of orthologous clusters is an important component of comparative
genomics studies. Identifying the overlap among orthologous clusters can enable us to …
genomics studies. Identifying the overlap among orthologous clusters can enable us to …
Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication
Little is known about the genetic changes that distinguish domestic cat populations from
their wild progenitors. Here we describe a high-quality domestic cat reference genome …
their wild progenitors. Here we describe a high-quality domestic cat reference genome …
Whole-genome sequencing of native sheep provides insights into rapid adaptations to extreme environments
JI Yang, WR Li, FH Lv, SG He, SL Tian… - Molecular biology …, 2016 - academic.oup.com
Global climate change has a significant effect on extreme environments and a profound
influence on species survival. However, little is known of the genome-wide pattern of …
influence on species survival. However, little is known of the genome-wide pattern of …
Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae)
Inter-species hybridization has been recently recognized as potentially common in wild
animals, but the extent to which it shapes modern genomes is still poorly understood …
animals, but the extent to which it shapes modern genomes is still poorly understood …