Context-specific regulation and function of mRNA alternative polyadenylation
S Mitschka, C Mayr - Nature Reviews Molecular Cell Biology, 2022 - nature.com
Alternative cleavage and polyadenylation (APA) is a widespread mechanism to generate
mRNA isoforms with alternative 3′ untranslated regions (UTRs). The expression of …
mRNA isoforms with alternative 3′ untranslated regions (UTRs). The expression of …
Extensible benchmarking of methods that identify and quantify polyadenylation sites from RNA-seq data
S Bryce-Smith, D Burri, MR Gazzara, CJ Herrmann… - RNA, 2023 - rnajournal.cshlp.org
The tremendous rate with which data is generated and analysis methods emerge makes it
increasingly difficult to keep track of their domain of applicability, assumptions, limitations …
increasingly difficult to keep track of their domain of applicability, assumptions, limitations …
The transcriptional terminator XRN2 and the RNA-binding protein Sam68 link alternative polyadenylation to cell cycle progression in prostate cancer
M Pieraccioli, C Caggiano, L Mignini, C Zhong… - Nature structural & …, 2022 - nature.com
Alternative polyadenylation (APA) yields transcripts differing in their 3′-end, and its
regulation is altered in cancer, including prostate cancer. Here we have uncovered a …
regulation is altered in cancer, including prostate cancer. Here we have uncovered a …
Exploring the multifunctionality of SR proteins
I Slišković, H Eich… - Biochemical Society …, 2022 - portlandpress.com
Members of the arginine–serine-rich protein family (SR proteins) are multifunctional RNA-
binding proteins that have emerged as key determinants for mRNP formation, identity and …
binding proteins that have emerged as key determinants for mRNP formation, identity and …
Sleep and memory: The impact of sleep deprivation on transcription, translational control, and protein synthesis in the brain
LC Lyons, Y Vanrobaeys, T Abel - Journal of neurochemistry, 2023 - Wiley Online Library
In countries around the world, sleep deprivation represents a widespread problem affecting
school‐age children, teenagers, and adults. Acute sleep deprivation and more chronic sleep …
school‐age children, teenagers, and adults. Acute sleep deprivation and more chronic sleep …
Dynamic variations of 3′ UTR length reprogram the mRNA regulatory landscape
E Navarro, A Mallén, M Hueso - Biomedicines, 2021 - mdpi.com
This paper concerns 3′-untranslated regions (3′ UTRs) of mRNAs, which are non-coding
regulatory platforms that control stability, fate and the correct spatiotemporal translation of …
regulatory platforms that control stability, fate and the correct spatiotemporal translation of …
[HTML][HTML] Towards understandings of serine/arginine-rich splicing factors
D Li, W Yu, M Lai - Acta Pharmaceutica Sinica B, 2023 - Elsevier
Serine/arginine-rich splicing factors (SRSFs) refer to twelve RNA-binding proteins which
regulate splice site recognition and spliceosome assembly during precursor messenger …
regulate splice site recognition and spliceosome assembly during precursor messenger …
Dysregulated RNA polyadenylation contributes to metabolic impairment in non-alcoholic fatty liver disease
AM Jobbins, N Haberman, N Artigas… - Nucleic Acids …, 2022 - academic.oup.com
Pre-mRNA processing is an essential mechanism for the generation of mature mRNA and
the regulation of gene expression in eukaryotic cells. While defects in pre-mRNA processing …
the regulation of gene expression in eukaryotic cells. While defects in pre-mRNA processing …
Coordination of alternative splicing and alternative polyadenylation revealed by targeted long read sequencing
Nervous system development is associated with extensive regulation of alternative splicing
(AS) and alternative polyadenylation (APA). AS and APA have been extensively studied in …
(AS) and alternative polyadenylation (APA). AS and APA have been extensively studied in …
CFIm-mediated alternative polyadenylation remodels cellular signaling and miRNA biogenesis
The mammalian cleavage factor I (CFIm) has been implicated in alternative polyadenylation
(APA) in a broad range of contexts, from cancers to learning deficits and parasite infections …
(APA) in a broad range of contexts, from cancers to learning deficits and parasite infections …