[HTML][HTML] Current and emerging trends in techniques for plant pathogen detection

M Venbrux, S Crauwels, H Rediers - Frontiers in Plant Science, 2023 - frontiersin.org
Plant pathogenic microorganisms cause substantial yield losses in several economically
important crops, resulting in economic and social adversity. The spread of such plant …

[HTML][HTML] Metabarcoding from microbes to mammals: comprehensive bioassessment on a global scale

ZG Compson, B McClenaghan, GAC Singer… - Frontiers in Ecology …, 2020 - frontiersin.org
Global biodiversity loss is unprecedented, and threats to existing biodiversity are growing.
Given pervasive global change, a major challenge facing resource managers is a lack of …

Comparing environmental metabarcoding and trawling survey of demersal fish communities in the Gulf of St. Lawrence, Canada

SF Afzali, H Bourdages, M Laporte, C Mérot… - Environmental …, 2021 - Wiley Online Library
Biodiversity assessment is an important part of conservation management that ideally can
be accomplished with noninvasive methods without influencing the structure and functioning …

Development and evaluation of fish eDNA metabarcoding assays facilitate the detection of cryptic seahorse taxa (family: Syngnathidae)

GM Nester, M De Brauwer, A Koziol… - Environmental …, 2020 - Wiley Online Library
Environmental DNA (eDNA) metabarcoding methods have demonstrated their potential as
noninvasive techniques for the monitoring and conservation of marine fishes, including rare …

[HTML][HTML] Environmental DNA gives comparable results to morphology-based indices of macroinvertebrates in a large-scale ecological assessment

J Brantschen, RC Blackman, JC Walser, F Altermatt - PloS one, 2021 - journals.plos.org
Anthropogenic activities are changing the state of ecosystems worldwide, affecting
community composition and often resulting in loss of biodiversity. Rivers are among the most …

[HTML][HTML] COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems

M Hajibabaei, TM Porter, M Wright, J Rudar - PLoS One, 2019 - journals.plos.org
Mixed community or environmental DNA marker gene sequencing has become a commonly
used technique for biodiversity analyses in freshwater systems. Many cytochrome c oxidase …

[HTML][HTML] Prioritizing taxa for genetic reference database development to advance inland water conservation

ME Monchamp, ZE Taranu, RE Garner, T Rehill… - Biological …, 2023 - Elsevier
Biodiversity loss has accelerated over the past century and freshwater species overall are
among those experiencing greatest declines. Genetic resources have the potential to help …

Coming of age for COI metabarcoding of whole organism community DNA: towards bioinformatic harmonisation

TJ Creedy, C Andújar… - Molecular Ecology …, 2022 - Wiley Online Library
Metabarcoding of DNA extracted from community samples of whole organisms (whole
organism community DNA, wocDNA) is increasingly being applied to terrestrial, marine and …

[HTML][HTML] A comparison of seasonal composition and structure of fish community between environmental DNA technology and gillnetting in the Pearl River Estuary …

Z Li, P Jiang, L Wang, L Liu, M Li, K Zou - Ecological Indicators, 2023 - Elsevier
Non-destructive and cost-effective fish diversity monitoring approaches are needed for the
management and protection of estuarine ecosystems. Environmental DNA (eDNA) …

Italian odonates in the Pandora's box: A comprehensive DNA barcoding inventory shows taxonomic warnings at the Holarctic scale

A Galimberti, G Assandri, D Maggioni… - Molecular Ecology …, 2021 - Wiley Online Library
The Odonata are considered among the most endangered freshwater faunal taxa. Their
DNA‐based monitoring relies on validated reference data sets that are often lacking or do …