Using comparative genome analysis to identify problems in annotated microbial genomes

MS Poptsova, JP Gogarten - Microbiology, 2010 - microbiologyresearch.org
Genome annotation is a tedious task that is mostly done by automated methods; however,
the accuracy of these approaches has been questioned since the beginning of the …

CREST–classification resources for environmental sequence tags

A Lanzén, SL Jørgensen, DH Huson, M Gorfer… - PloS one, 2012 - journals.plos.org
Sequencing of taxonomic or phylogenetic markers is becoming a fast and efficient method
for studying environmental microbial communities. This has resulted in a steadily growing …

[图书][B] Environmental microbiology: fundamentals and applications

JC Bertrand, P Caumette, P Lebaron, R Matheron… - 2015 - Springer
The average citizen thinks of microbes as dangerous or at least as nasty enemies to her/his
health that she/he cannot see. The invisibility to the naked eye is the reason why microbes …

Methods for studying microorganisms in the environment

F Joux, JC Bertrand, R De Wit, V Grossi… - Environmental …, 2015 - Springer
The main methods for the study of microorganisms in the environment (water, soil, sediment,
biofilms), the different techniques of sampling for measuring biomass, the activities, and the …

[图书][B] Analysis of sequencing data in environmental genomics. Exploring the diversity of the microbial biosphere

A Lanzén - 2013 - bora.uib.no
Most life on this planet is microbial and for the last two decades, environmental genomics
has contributed to reveal an impressive biodiversity of this microbial life. This approach …

RegExpBlasting (REB), a Regular Expression Blasting algorithm based on multiply aligned sequences

F Rubino, M Attimonelli - BMC bioinformatics, 2009 - Springer
Background One of the most frequent uses of bioinformatics tools concerns functional
characterization of a newly produced nucleotide sequence (a query sequence) by applying …