A comparison and assessment of computational method for identifying recombination hotspots in Saccharomyces cerevisiae
Meiotic recombination is one of the most important driving forces of biological evolution,
which is initiated by double-strand DNA breaks. Recombination has important roles in …
which is initiated by double-strand DNA breaks. Recombination has important roles in …
[HTML][HTML] Writers, readers, and erasers RNA modifications and drug resistance in cancer
D Chen, X Gu, Y Nurzat, L Xu, X Li, L Wu, H Jiao… - Molecular cancer, 2024 - Springer
Drug resistance in cancer cells significantly diminishes treatment efficacy, leading to
recurrence and metastasis. A critical factor contributing to this resistance is the epigenetic …
recurrence and metastasis. A critical factor contributing to this resistance is the epigenetic …
[HTML][HTML] Deep-AmPEP30: improve short antimicrobial peptides prediction with deep learning
Antimicrobial peptides (AMPs) are a valuable source of antimicrobial agents and a potential
solution to the multi-drug resistance problem. In particular, short-length AMPs have been …
solution to the multi-drug resistance problem. In particular, short-length AMPs have been …
iMRM: a platform for simultaneously identifying multiple kinds of RNA modifications
K Liu, W Chen - Bioinformatics, 2020 - academic.oup.com
Motivation RNA modifications play critical roles in a series of cellular and developmental
processes. Knowledge about the distributions of RNA modifications in the transcriptomes …
processes. Knowledge about the distributions of RNA modifications in the transcriptomes …
Predicting thermophilic proteins by machine learning
XF Wang, P Gao, YF Liu, HF Li, F Lu - Current Bioinformatics, 2020 - ingentaconnect.com
Background: Thermophilic proteins can maintain good activity under high temperature,
therefore, it is important to study thermophilic proteins for the thermal stability of proteins …
therefore, it is important to study thermophilic proteins for the thermal stability of proteins …
Design powerful predictor for mRNA subcellular location prediction in Homo sapiens
Messenger RNAs (mRNAs) shoulder special responsibilities that transmit genetic code from
DNA to discrete locations in the cytoplasm. The locating process of mRNA might provide …
DNA to discrete locations in the cytoplasm. The locating process of mRNA might provide …
[HTML][HTML] A statistical analysis of the sequence and structure of thermophilic and non-thermophilic proteins
Z Ahmed, H Zulfiqar, L Tang, H Lin - International Journal of Molecular …, 2022 - mdpi.com
Thermophilic proteins have various practical applications in theoretical research and in
industry. In recent years, the demand for thermophilic proteins on an industrial scale has …
industry. In recent years, the demand for thermophilic proteins on an industrial scale has …
Multi-substrate selectivity based on key loops and non-homologous domains: new insight into ALKBH family
B Xu, D Liu, Z Wang, R Tian, Y Zuo - Cellular and Molecular Life Sciences, 2021 - Springer
AlkB homologs (ALKBH) are a family of specific demethylases that depend on Fe 2+ and α-
ketoglutarate to catalyze demethylation on different substrates, including ssDNA, dsDNA …
ketoglutarate to catalyze demethylation on different substrates, including ssDNA, dsDNA …
Deep-4mCW2V: A sequence-based predictor to identify N4-methylcytosine sites in Escherichia coli
Abstract N4-methylcytosine (4mC) is a type of DNA modification which could regulate
several biological progressions such as transcription regulation, replication and gene …
several biological progressions such as transcription regulation, replication and gene …
[HTML][HTML] iDNA6mA-Rice: a computational tool for detecting N6-methyladenine sites in rice
DNA N6-methyladenine (6mA) is a dominant DNA modification form and involved in many
biological functions. The accurate genome-wide identification of 6mA sites may increase …
biological functions. The accurate genome-wide identification of 6mA sites may increase …