A comparison and assessment of computational method for identifying recombination hotspots in Saccharomyces cerevisiae

H Yang, W Yang, FY Dao, H Lv, H Ding… - Briefings in …, 2020 - academic.oup.com
Meiotic recombination is one of the most important driving forces of biological evolution,
which is initiated by double-strand DNA breaks. Recombination has important roles in …

[HTML][HTML] Writers, readers, and erasers RNA modifications and drug resistance in cancer

D Chen, X Gu, Y Nurzat, L Xu, X Li, L Wu, H Jiao… - Molecular cancer, 2024 - Springer
Drug resistance in cancer cells significantly diminishes treatment efficacy, leading to
recurrence and metastasis. A critical factor contributing to this resistance is the epigenetic …

[HTML][HTML] Deep-AmPEP30: improve short antimicrobial peptides prediction with deep learning

J Yan, P Bhadra, A Li, P Sethiya, L Qin, HK Tai… - … Therapy-Nucleic Acids, 2020 - cell.com
Antimicrobial peptides (AMPs) are a valuable source of antimicrobial agents and a potential
solution to the multi-drug resistance problem. In particular, short-length AMPs have been …

iMRM: a platform for simultaneously identifying multiple kinds of RNA modifications

K Liu, W Chen - Bioinformatics, 2020 - academic.oup.com
Motivation RNA modifications play critical roles in a series of cellular and developmental
processes. Knowledge about the distributions of RNA modifications in the transcriptomes …

Predicting thermophilic proteins by machine learning

XF Wang, P Gao, YF Liu, HF Li, F Lu - Current Bioinformatics, 2020 - ingentaconnect.com
Background: Thermophilic proteins can maintain good activity under high temperature,
therefore, it is important to study thermophilic proteins for the thermal stability of proteins …

Design powerful predictor for mRNA subcellular location prediction in Homo sapiens

ZY Zhang, YH Yang, H Ding, D Wang… - Briefings in …, 2021 - academic.oup.com
Messenger RNAs (mRNAs) shoulder special responsibilities that transmit genetic code from
DNA to discrete locations in the cytoplasm. The locating process of mRNA might provide …

[HTML][HTML] A statistical analysis of the sequence and structure of thermophilic and non-thermophilic proteins

Z Ahmed, H Zulfiqar, L Tang, H Lin - International Journal of Molecular …, 2022 - mdpi.com
Thermophilic proteins have various practical applications in theoretical research and in
industry. In recent years, the demand for thermophilic proteins on an industrial scale has …

Multi-substrate selectivity based on key loops and non-homologous domains: new insight into ALKBH family

B Xu, D Liu, Z Wang, R Tian, Y Zuo - Cellular and Molecular Life Sciences, 2021 - Springer
AlkB homologs (ALKBH) are a family of specific demethylases that depend on Fe 2+ and α-
ketoglutarate to catalyze demethylation on different substrates, including ssDNA, dsDNA …

Deep-4mCW2V: A sequence-based predictor to identify N4-methylcytosine sites in Escherichia coli

H Zulfiqar, ZJ Sun, QL Huang, SS Yuan, H Lv, FY Dao… - Methods, 2022 - Elsevier
Abstract N4-methylcytosine (4mC) is a type of DNA modification which could regulate
several biological progressions such as transcription regulation, replication and gene …

[HTML][HTML] iDNA6mA-Rice: a computational tool for detecting N6-methyladenine sites in rice

H Lv, FY Dao, ZX Guan, D Zhang, JX Tan… - Frontiers in …, 2019 - frontiersin.org
DNA N6-methyladenine (6mA) is a dominant DNA modification form and involved in many
biological functions. The accurate genome-wide identification of 6mA sites may increase …