Evolution by gene loss

R Albalat, C Cañestro - Nature Reviews Genetics, 2016 - nature.com
The recent increase in genomic data is revealing an unexpected perspective of gene loss as
a pervasive source of genetic variation that can cause adaptive phenotypic diversity. This …

Honey bees as models for gut microbiota research

H Zheng, MI Steele, SP Leonard, EVS Motta, NA Moran - Lab animal, 2018 - nature.com
The gut microbiota of the honey bee (Apis mellifera) offers several advantages as an
experimental system for addressing how gut communities affect their hosts and for exploring …

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation

NA O'Leary, MW Wright, JR Brister, S Ciufo… - Nucleic acids …, 2016 - academic.oup.com
The RefSeq project at the National Center for Biotechnology Information (NCBI) maintains
and curates a publicly available database of annotated genomic, transcript, and protein …

EAACI molecular allergology user's guide

PM Matricardi, J Kleine‐Tebbe… - Pediatric Allergy and …, 2016 - Wiley Online Library
The availability of allergen molecules ('components') from several protein families has
advanced our understanding of immunoglobulin E (IgE)‐mediated responses and enabled …

Phylogenomic insights into the evolution of stinging wasps and the origins of ants and bees

MG Branstetter, BN Danforth, JP Pitts, BC Faircloth… - Current Biology, 2017 - cell.com
Summary The stinging wasps (Hymenoptera: Aculeata) are an extremely diverse lineage of
hymenopteran insects, encompassing over 70,000 described species and a diversity of life …

OrthoDB v9. 1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs

EM Zdobnov, F Tegenfeldt, D Kuznetsov… - Nucleic acids …, 2017 - academic.oup.com
OrthoDB is a comprehensive catalog of orthologs, genes inherited by extant species from a
single gene in their last common ancestor. In 2016 OrthoDB reached its 9th release, growing …

The gut microbiota of insects–diversity in structure and function

P Engel, NA Moran - FEMS microbiology reviews, 2013 - academic.oup.com
Insect guts present distinctive environments for microbial colonization, and bacteria in the
gut potentially provide many beneficial services to their hosts. Insects display a wide range …

Phylogenomics resolves the timing and pattern of insect evolution

B Misof, S Liu, K Meusemann, RS Peters, A Donath… - Science, 2014 - science.org
Insects are the most speciose group of animals, but the phylogenetic relationships of many
major lineages remain unresolved. We inferred the phylogeny of insects from 1478 protein …

Complex cocktails: the evolutionary novelty of venoms

NR Casewell, W Wüster, FJ Vonk, RA Harrison… - Trends in ecology & …, 2013 - cell.com
Venoms have evolved on numerous occasions throughout the animal kingdom. These
'biochemical weapon systems' typically function to facilitate, or protect the producing animal …

Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants

SA Smith, MJ Moore, JW Brown, Y Yang - BMC evolutionary biology, 2015 - Springer
Background The use of transcriptomic and genomic datasets for phylogenetic reconstruction
has become increasingly common as researchers attempt to resolve recalcitrant nodes with …