Multifaceted roles of disulfide bonds. Peptides as therapeutics

M Gongora-Benitez, J Tulla-Puche… - Chemical Reviews, 2014 - ACS Publications
In the last century, small-molecule natural products were the main inspiration for most drug
discovery programs based either on high-throughput screening (HTS) or rational design …

Inhibition of α-helix-mediated protein–protein interactions using designed molecules

V Azzarito, K Long, NS Murphy, AJ Wilson - Nature chemistry, 2013 - nature.com
Inhibition of protein–protein interactions (PPIs) represents a significant challenge because it
is unclear how they can be effectively and selectively targeted using small molecules …

ff14SB: improving the accuracy of protein side chain and backbone parameters from ff99SB

JA Maier, C Martinez, K Kasavajhala… - Journal of chemical …, 2015 - ACS Publications
Molecular mechanics is powerful for its speed in atomistic simulations, but an accurate force
field is required. The Amber ff99SB force field improved protein secondary structure balance …

Constraining cyclic peptides to mimic protein structure motifs

TA Hill, NE Shepherd, F Diness… - Angewandte Chemie …, 2014 - Wiley Online Library
Many proteins exert their biological activities through small exposed surface regions called
epitopes that are folded peptides of well‐defined three‐dimensional structures. Short …

Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE)

S Lyskov, FC Chou, SO Conchuir, BS Der, K Drew… - PloS one, 2013 - journals.plos.org
The Rosetta molecular modeling software package provides experimentally tested and
rapidly evolving tools for the 3D structure prediction and high-resolution design of proteins …

Collaborative routes to clarifying the murky waters of aqueous supramolecular chemistry

PS Cremer, AH Flood, BC Gibb, DL Mobley - Nature chemistry, 2018 - nature.com
On planet Earth, water is everywhere: the majority of the surface is covered with it; it is a key
component of all life; its vapour and droplets fill the lower atmosphere; and even rocks …

Assessing helical protein interfaces for inhibitor design

BN Bullock, AL Jochim, PS Arora - Journal of the American …, 2011 - ACS Publications
Structure-based design of synthetic inhibitors of protein–protein interactions (PPIs) requires
adept molecular design and synthesis strategies as well as knowledge of targetable …

An orthosteric inhibitor of the Ras-Sos interaction

A Patgiri, KK Yadav, PS Arora, D Bar-Sagi - Nature chemical biology, 2011 - nature.com
Mimics of α-helices on protein surfaces have emerged as powerful reagents for
antagonizing protein-protein interactions, which are difficult to target with small molecules …

Peptide-based inhibitors of protein–protein interactions: biophysical, structural and cellular consequences of introducing a constraint

H Wang, RS Dawber, P Zhang, M Walko, AJ Wilson… - Chemical …, 2021 - pubs.rsc.org
Protein–protein interactions (PPIs) are implicated in the majority of cellular processes by
enabling and regulating the function of individual proteins. Thus, PPIs represent high-value …

Peptide-based inhibitors of protein–protein interactions

P Wójcik, Ł Berlicki - Bioorganic & medicinal chemistry letters, 2016 - Elsevier
Protein–protein interactions (PPIs) are key elements of several important biological
processes and have emerged as valuable targets in medicinal chemistry. Importantly …