Metagenomics: An effective approach for exploring microbial diversity and functions

NN Nam, HDK Do, KT Loan Trinh, NY Lee - Foods, 2023 - mdpi.com
Various fields have been identified in the “omics” era, such as genomics, proteomics,
transcriptomics, metabolomics, phenomics, and metagenomics. Among these …

Next-generation food research: Use of meta-omic approaches for characterizing microbial communities along the food chain

M Yap, D Ercolini, A Álvarez-Ordóñez… - Annual Review of …, 2022 - annualreviews.org
Microorganisms exist along the food chain and impact the quality and safety of foods in both
positive and negative ways. Identifying and understanding the behavior of these microbial …

Opportunities and challenges of understanding community assembly in spontaneous food fermentation

M Mudoor Sooresh, BP Willing, BCT Bourrie - Foods, 2023 - mdpi.com
Spontaneous fermentations that do not rely on backslopping or industrial starter cultures
were especially important to the early development of society and are still practiced around …

A dark matter in sake brewing: Origin of microbes producing a Kimoto-style fermentation starter

K Ito, R Niwa, K Kobayashi, T Nakagawa… - Frontiers in …, 2023 - frontiersin.org
Introduction In Kimoto-style fermentation, a fermentation starter is produced before the
primary brewing process to stabilize fermentation. Nitrate-reducing bacteria, mainly derived …

Spatiotemporal distribution of environmental microbiota in spontaneous fermentation workshop: The case of Chinese Baijiu

Y Li, S Liu, S Zhang, T Liu, H Qin, C Shen, H Liu… - Food Research …, 2022 - Elsevier
The strong-flavor Baijiu (SFB) brewing workshop is a complex ecosystem with diverse
microbiomes. As a potential source of microbiomes in fermentation, microbiota in the …

Fermented foods, their microbiome and its potential in boosting human health

V Valentino, R Magliulo, D Farsi… - Microbial …, 2024 - Wiley Online Library
Fermented foods (FFs) are part of the cultural heritage of several populations, and their
production dates back 8000 years. Over the last~ 150 years, the microbial consortia of many …

A Meta-analysis of bacterial communities in food processing facilities: driving forces for assembly of Core and accessory microbiomes across different food …

ZS Xu, T Ju, X Yang, M Gänzle - Microorganisms, 2023 - mdpi.com
Microbial spoilage is a major cause of food waste. Microbial spoilage is dependent on the
contamination of food from the raw materials or from microbial communities residing in food …

The application of metagenomics to study microbial communities and develop desirable traits in fermented foods

M Srinivas, O O'Sullivan, PD Cotter, D Sinderen… - Foods, 2022 - mdpi.com
The microbial communities present within fermented foods are diverse and dynamic,
producing a variety of metabolites responsible for the fermentation processes, imparting …

Overview of advanced technologies for volatile organic compounds measurement in food quality and safety

H Lin, H Jiang, SYSS Adade, W Kang… - Critical Reviews in …, 2023 - Taylor & Francis
Food quality and nutrition have received much attention in recent decades, thanks to
changes in consumer behavior and gradual increases in food consumption. The demand for …

[HTML][HTML] Evidence of virulence and antibiotic resistance genes from the microbiome mapping in minimally processed vegetables producing facilities

V Valentino, G Sequino, JF Cobo-Díaz… - Food Research …, 2022 - Elsevier
Daily consumption of fresh vegetables is highly recommended by international health
organizations, because of their high content of nutrients. However, fresh vegetables might …