275 years of forestry meets genomics in Pinus sylvestris
T Pyhäjärvi, ST Kujala… - Evolutionary Applications, 2020 - Wiley Online Library
Pinus sylvestris has a long history of basic and applied research that is relevant for both
forestry and evolutionary studies. Its patterns of adaptive variation and role in forest …
forestry and evolutionary studies. Its patterns of adaptive variation and role in forest …
Applications of transcriptome in conifer species
J Wei, X Pei, X Hu, S Sun, C Zhao, R Han… - Plant Cell, Tissue and …, 2022 - Springer
High-throughput sequencing technology has been widely used and continuously optimized.
As one kind of high-throughput sequencing technology, RNA sequencing (RNA-seq) can …
As one kind of high-throughput sequencing technology, RNA sequencing (RNA-seq) can …
Taming the massive genome of Scots pine with PiSy50k, a new genotyping array for conifer research
Pinus sylvestris (Scots pine) is the most widespread coniferous tree in the boreal forests of
Eurasia, with major economic and ecological importance. However, its large and repetitive …
Eurasia, with major economic and ecological importance. However, its large and repetitive …
Comprehensive collection of genes and comparative analysis of full-length transcriptome sequences from Japanese larch (Larix kaempferi) and Kuril larch (Larix …
K Mishima, H Hirakawa, T Iki, Y Fukuda, T Hirao… - BMC Plant …, 2022 - Springer
Abstract Background Japanese larch (Larix kaempferi) is an economically important
deciduous conifer species that grows in cool-temperate forests and is endemic to Japan …
deciduous conifer species that grows in cool-temperate forests and is endemic to Japan …
Evolutionary history of the mediterranean Pinus halepensis-brutia species complex using gene-resequencing and transcriptomic approaches
Key message Complementary gene-resequencing and transcriptomic approaches reveal
contrasted evolutionary histories in a species complex. Abstract Pinus halepensis and Pinus …
contrasted evolutionary histories in a species complex. Abstract Pinus halepensis and Pinus …
Seed-derived defensins from Scots pine: structural and functional features
Abstract Main conclusion The recombinant Ps Def5. 1 defensin inhibits the growth of
phytopathogenic fungi, Gram-positive and Gram-negative bacteria, and human pathogen …
phytopathogenic fungi, Gram-positive and Gram-negative bacteria, and human pathogen …
De novo transcriptome assembly and discovery of drought-responsive genes in white spruce (Picea glauca)
Z Ribeyre, C Depardieu, J Prunier, G Pelletier… - PloS one, 2025 - journals.plos.org
Forests face an escalating threat from the increasing frequency of extreme drought events
driven by climate change. To address this challenge, it is crucial to understand how widely …
driven by climate change. To address this challenge, it is crucial to understand how widely …
Optimising Exome Captures in Species With Large Genomes Using Species‐Specific Repetitive DNA Blocker
R Kesälahti, TA Kumpula, S Cervantes… - Molecular Ecology …, 2024 - Wiley Online Library
Large and highly repetitive genomes are common. However, research interests usually lie
within the non‐repetitive parts of the genome, as they are more likely functional, and can be …
within the non‐repetitive parts of the genome, as they are more likely functional, and can be …
Effects of ploidy and life history traits on the footprints of selection and demographic events in forest trees genomes
S Cervantes Arango - 2023 - oulurepo.oulu.fi
Selection and demography are fundamental processes that affect the genetic diversity of a
species, but the interaction of these processes with the life history traits of a species …
species, but the interaction of these processes with the life history traits of a species …
Roast: a tool for reference-free optimization of supertranscriptome assemblies
M Shabbir, A Mithani - BMC bioinformatics, 2024 - Springer
Background Transcriptomic studies involving organisms for which reference genomes are
not available typically start by generating de novo transcriptome or supertranscriptome …
not available typically start by generating de novo transcriptome or supertranscriptome …