[HTML][HTML] Sequence-specific DNA labelling for fluorescence microscopy

S Pradhan, S Apaydin, J Bucevičius… - Biosensors and …, 2023 - Elsevier
The preservation of nucleus structure during microscopy imaging is a top priority for
understanding chromatin organization, genome dynamics, and gene expression regulation …

[HTML][HTML] Chromosome genomics uncovers plant genome organization and function

J Zwyrtková, H Šimková, J Doležel - Biotechnology Advances, 2021 - Elsevier
The identification of causal genomic loci and their interactions underlying various traits in
plants has been greatly aided by progress in understanding the organization of the nuclear …

cGMP-grade human iPSC-derived retinal photoreceptor precursor cells rescue cone photoreceptor damage in non-human primates

S Lingam, Z Liu, B Yang, W Wong, BH Parikh… - Stem Cell Research & …, 2021 - Springer
Background Retinal regenerative therapies hold great promise for the treatment of inherited
retinal degenerations (IRDs). Studies in preclinical lower mammal models of IRDs have …

Recent advancements in CRISPR-Cas toolbox for imaging applications

V Singh, M Jain - Critical Reviews in Biotechnology, 2022 - Taylor & Francis
The imaging of chromatin, genomic loci, RNAs, and proteins is very important to study their
localization, interaction, and coordinated regulation. Recently, several clustered regularly …

Application of aptamers improves CRISPR-based live imaging of plant telomeres

S Khosravi, P Schindele, E Gladilin… - Frontiers in plant …, 2020 - frontiersin.org
Development of live imaging techniques for providing information how chromatin is
organized in living cells is pivotal to decipher the regulation of biological processes. Here …

FISH going meso-scale: A microscopic search for chromatin domains

A Maslova, A Krasikova - Frontiers in Cell and Developmental Biology, 2021 - frontiersin.org
The intimate relationships between genome structure and function direct efforts toward
deciphering three-dimensional chromatin organization within the interphase nuclei at …

[HTML][HTML] Application and prospects of CRISPR/Cas9-based methods to trace defined genomic sequences in living and fixed plant cells

S Khosravi, T Ishii, S Dreissig, A Houben - Chromosome Research, 2020 - Springer
The 3D organization of chromatin plays an important role in genome stability and many
other pivotal biological programs. Therefore, the establishment of imaging methods, which …

The role of noncoding RNAs in double-strand break repair

N Durut, O Mittelsten Scheid - Frontiers in Plant Science, 2019 - frontiersin.org
Genome stability is constantly threatened by DNA lesions generated by different
environmental factors as well as endogenous processes. If not properly and timely repaired …

CRISPR/Cas9-based RGEN-ISL allows the simultaneous and specific visualization of proteins, DNA repeats, and sites of DNA replication

A Němečková, C Wäsch, V Schubert, T Ishii… - … and Genome Research, 2019 - karger.com
Visualizing the spatiotemporal organization of the genome will improve our understanding of
how chromatin structure and function are intertwined. Here, we describe a further …

The potential of ALFA-tag and tyramide-based fluorescence signal amplification to expand the CRISPR-based DNA imaging toolkit

BP Potlapalli, J Fuchs, T Rutten… - Journal of …, 2024 - academic.oup.com
Understanding the spatial organization of genomes within chromatin is crucial for
deciphering gene regulation. A recently developed CRISPR–dCas9-based genome labeling …