Improving helminth genome resources in the post-genomic era
SR Doyle - Trends in parasitology, 2022 - cell.com
Rapid advancement in high-throughput sequencing and analytical approaches has seen a
steady increase in the generation of genomic resources for helminth parasites. Now …
steady increase in the generation of genomic resources for helminth parasites. Now …
Chromosome fusions repatterned recombination rate and facilitated reproductive isolation during Pristionchus nematode speciation
K Yoshida, C Rödelsperger, W Röseler… - Nature Ecology & …, 2023 - nature.com
Large-scale genome-structural evolution is common in various organisms. Recent
developments in speciation genomics revealed the importance of inversions, whereas the …
developments in speciation genomics revealed the importance of inversions, whereas the …
Insights from the first genome assembly of Onion (Allium cepa)
R Finkers, M van Kaauwen, K Ament, K Burger-Meijer… - G3, 2021 - academic.oup.com
Onion is an important vegetable crop with an estimated genome size of 16 Gb. We describe
the de novo assembly and ab initio annotation of the genome of a doubled haploid onion …
the de novo assembly and ab initio annotation of the genome of a doubled haploid onion …
Novel and improved Caenorhabditis briggsae gene models generated by community curation
Abstract Background The nematode Caenorhabditis briggsae has been used as a model in
comparative genomics studies with Caenorhabditis elegans because of their striking …
comparative genomics studies with Caenorhabditis elegans because of their striking …
Thousands of Pristionchus pacificus orphan genes were integrated into developmental networks that respond to diverse environmental microbiota
M Athanasouli, N Akduman, W Röseler, P Theam… - PLoS …, 2023 - journals.plos.org
Adaptation of organisms to environmental change may be facilitated by the creation of new
genes. New genes without homologs in other lineages are known as taxonomically …
genes. New genes without homologs in other lineages are known as taxonomically …
Neurogenesis in Caenorhabditis elegans
RJ Poole, N Flames, L Cochella - Genetics, 2024 - academic.oup.com
Animals rely on their nervous systems to process sensory inputs, integrate these with
internal signals, and produce behavioral outputs. This is enabled by the highly specialized …
internal signals, and produce behavioral outputs. This is enabled by the highly specialized …
Single worm transcriptomics identifies a developmental core network of oscillating genes with deep conservation across nematodes
High-resolution spatial and temporal maps of gene expression have facilitated a
comprehensive understanding of animal development and evolution. In nematodes, the …
comprehensive understanding of animal development and evolution. In nematodes, the …
Transcriptome age of individual cell types in Caenorhabditis elegans
F Ma, C Zheng - Proceedings of the National Academy of …, 2023 - National Acad Sciences
The phylotranscriptomic analysis of development in several species revealed the expression
of older and more conserved genes in midembryonic stages and younger and more …
of older and more conserved genes in midembryonic stages and younger and more …
Analysis of repeat elements in the Pristionchus pacificus genome reveals an ancient invasion by horizontally transferred transposons
M Athanasouli, C Rödelsperger - BMC genomics, 2022 - Springer
Background Repetitive sequences and mobile elements make up considerable fractions of
individual genomes. While transposition events can be detrimental for organismal fitness …
individual genomes. While transposition events can be detrimental for organismal fitness …
[HTML][HTML] Co-option of an astacin metalloprotease is associated with an evolutionarily novel feeding morphology in a predatory nematode
Y Ishita, A Onodera, T Ekino, T Chihara… - Molecular Biology and …, 2023 - ncbi.nlm.nih.gov
Animals consume a wide variety of food sources to adapt to different environments.
However, the genetic mechanisms underlying the acquisition of evolutionarily novel feeding …
However, the genetic mechanisms underlying the acquisition of evolutionarily novel feeding …