Extremely thermophilic microorganisms as metabolic engineering platforms for production of fuels and industrial chemicals

BM Zeldes, MW Keller, AJ Loder, CT Straub… - Frontiers in …, 2015 - frontiersin.org
Enzymes from extremely thermophilic microorganisms have been of technological interest
for some time because of their ability to catalyze reactions of industrial significance at …

CVTree3 web server for whole-genome-based and alignment-free prokaryotic phylogeny and taxonomy

G Zuo, B Hao - Genomics, Proteomics and Bioinformatics, 2015 - academic.oup.com
A faithful phylogeny and an objective taxonomy for prokaryotes should agree with each
other and ultimately follow the genome data. With the number of sequenced genomes …

CVTree: a parallel alignment-free phylogeny and taxonomy tool based on composition vectors of genomes

G Zuo - Genomics, Proteomics and Bioinformatics, 2021 - academic.oup.com
Abstract Composition Vector Tree (CVTree) is an alignment-free algorithm to infer
phylogenetic relationships from genome sequences. It has been successfully applied to …

Phylogeny and Taxonomy of Archaea: A Comparison of the Whole-Genome-Based CVTree Approach with 16S rRNA Sequence Analysis

G Zuo, Z Xu, B Hao - Life, 2015 - mdpi.com
A tripartite comparison of Archaea phylogeny and taxonomy at and above the rank order is
reported:(1) the whole-genome-based and alignment-free CVTree using 179 genomes;(2) …

[HTML][HTML] On K-peptide length in composition vector phylogeny of prokaryotes

G Zuo, Q Li, B Hao - Computational Biology and Chemistry, 2014 - Elsevier
Using an enlarged alphabet of K-tuples is the way to carry out alignment-free comparison of
genomes in the composition vector (CV) approach to prokaryotic phylogeny. We summarize …

[PDF][PDF] 从完全基因组出发建立原核生物亲缘关系和分类系统时遇到的数学问题

李强, 左光宏, 郝柏林 - 中国科学: 物理学力学天文学, 2014 - researchgate.net
摘要我们课题组近10 年所发展的组分矢量(CVTree) 方法, 已经成为从完全基因组出发而不使用
序列联配来构建细菌亲缘关系的有效手段. 在整个生物分类学日益后继乏人的背景下 …

[PDF][PDF] 基因组时代的计算微生物学

左光宏, 郝柏林 - 中国科学: 生命科学, 2017 - abc.gao-lab.org
摘要微生物基因组和RNA 序列构成生物学数据的重要部分. 从基因组出发而且不用序列联配的
CVTree 和基于16S rRNA 序列联配的LVTree, 是两套原始数据和计算过程相互独立的构建原核 …

[PDF][PDF] 物理Ⅰ: 凝聚态物理, 原子分子物理, 光物理和声学等

王力军, 王炜, 吕正红, 刘明, 杨金龙, 汪卫华, 张仁和… - researchgate.net
摘要大气压介质阻挡放电等离子体射流是近年来兴起的一种新的大气压低温等离子体放电技术,
是目前国际上等离子体科学与技术领域的研究热点之一. 作为一种经济, 便捷的等离子体产生 …

[PDF][PDF] Manual for WebCVTree v4

G Zuo - 2021 - cvtree.net
CVTree stands for Composition Vector Tree, which is the implementation of a cluster
alignmentfree algorithms to generate dissimilarity matrices from a comparatively large …

Whole-genome-based phylogeny and taxonomy for prokaryotes

G Zuo, B Hao - Phylogenetics, 2017 - books.google.com
A faithful prokaryotic phylogeny should be inferred from genomic data and phylogeny
determines taxonomy. The ever-growing amount of sequenced genomes makes this …