Impact of Domain Knowledge and Multi-Modality on Intelligent Molecular Property Prediction: A Systematic Survey

T Kuang, P Liu, Z Ren - Big Data Mining and Analytics, 2024 - ieeexplore.ieee.org
The precise prediction of molecular properties is essential for advancements in drug
development, particularly in virtual screening and compound optimization. The recent …

Molecular Data Programming: Towards Molecule Pseudo-labeling with Systematic Weak Supervision

X Juan, K Zhou, N Liu, T Chen… - Proceedings of the …, 2024 - openaccess.thecvf.com
The premise for the great advancement of molecular machine learning is dependent on a
considerable amount of labeled data. In many real-world scenarios the labeled molecules …

GTE: a graph learning framework for prediction of T-cell receptors and epitopes binding specificity

F Jiang, Y Guo, H Ma, S Na, W Zhong… - Briefings in …, 2024 - academic.oup.com
The interaction between T-cell receptors (TCRs) and peptides (epitopes) presented by major
histocompatibility complex molecules (MHC) is fundamental to the immune response …

Toward Robust Self-Training Paradigm for Molecular Prediction Tasks

H Ma, F Jiang, Y Rong, Y Guo… - Journal of Computational …, 2024 - liebertpub.com
Molecular prediction tasks normally demand a series of professional experiments to label
the target molecule, which suffers from the limited labeled data problem. One of the …

Robust semi-supervised classification for imbalanced and incomplete data

M Chen, J Dou, Y Fan, Y Song - Journal of Intelligent & Fuzzy …, 2023 - content.iospress.com
Self-training semi-supervised classification has grown in popularity as a research topic.
However, when faced with several challenges including outliers, imbalanced class, and …

Deep Learning for Molecular Property Prediction

H Ma - 2023 - search.proquest.com
Drug discovery has always been a crucial task for society, and molecular property prediction
is one of the fundamental problem. It is responsible for identifying the target properties or …

Effective Sequence Models and Graph Neural Networks for Molecular Data Analysis

C Yan - 2022 - search.proquest.com
Computer-aided drug discovery mainly relies on modern computers to model drug
molecules, which can speed up the process of drug discovery and reduce costs. In this …

[PDF][PDF] DEEP LEARNING FOR PROTEIN PROPERTY AND STRUCTURE PREDICTION

Y Guo - 2022 - mavmatrix.uta.edu
CHAPTER 2 PROTEIN ENSEMBLE LEARNING WITH ATROUS SPATIAL PYRAMID
NETWORKS FOR SECONDARY STRUCTURE PREDICTION This chapter investigates the …

[PDF][PDF] Causal Subgraphs and Information Bottlenecks: Redefining OOD Robustness in Graph Neural Networks

W An, W Zhong, F Jiang, H Ma, J Huang - fq.pkwyx.com
Graph Neural Networks (GNNs) are increasingly popular in processing graph-structured
data, yet they face significant challenges when training and testing distributions diverge …