Motivation Bacterial genomes present more variability than human genomes, which requires
important adjustments in computational tools that are developed for human data. In …

Motivation Small variant calling is an important component of many analyses, and, in many
instances, it is important to determine the set of variants which appear in multiple callsets …

Covering alignment problems arise from recent developments in genomics; so called pan-
genome graphs are replacing reference genomes, and advances in haplotyping enable full …

Detection of genomic variants is commonly conducted by aligning a set of reads sequenced
from an individual to the reference genome of the species and analyzing the resulting read …

Sequence alignments have been studied for decades under the simplified model of a
consensus sequence representing a chromosome. A natural question is if there is some …

Human genomes consist of pairs of homologous chromosomes, one of which is inherited
from the mother and the other from the father. Species, such as human, with pairs of …

We first list the funding sources and the distribution of expenses of each site separately. One
should note that comparison between different years or between universities is not always …