Protein data bank: a comprehensive review of 3D structure holdings and worldwide utilization by researchers, educators, and students
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB),
funded by the United States National Science Foundation, National Institutes of Health, and …
funded by the United States National Science Foundation, National Institutes of Health, and …
Modelling three-dimensional protein structures for applications in drug design
T Schmidt, A Bergner, T Schwede - Drug discovery today, 2014 - Elsevier
Highlights•The majority of proteins encoded in a genome are accessible by structure
modelling.•Modelling can provide accurate target predictions for structure-based drug …
modelling.•Modelling can provide accurate target predictions for structure-based drug …
QMEANDisCo—distance constraints applied on model quality estimation
G Studer, C Rempfer, AM Waterhouse… - …, 2020 - academic.oup.com
Motivation Methods that estimate the quality of a 3D protein structure model in absence of an
experimental reference structure are crucial to determine a model's utility and potential …
experimental reference structure are crucial to determine a model's utility and potential …
SWISS-MODEL: homology modelling of protein structures and complexes
A Waterhouse, M Bertoni, S Bienert… - Nucleic acids …, 2018 - academic.oup.com
Homology modelling has matured into an important technique in structural biology,
significantly contributing to narrowing the gap between known protein sequences and …
significantly contributing to narrowing the gap between known protein sequences and …
ProMod3—A versatile homology modelling toolbox
G Studer, G Tauriello, S Bienert, M Biasini… - PLoS computational …, 2021 - journals.plos.org
Computational methods for protein structure modelling are routinely used to complement
experimental structure determination, thus they help to address a broad spectrum of …
experimental structure determination, thus they help to address a broad spectrum of …
Modeling protein quaternary structure of homo-and hetero-oligomers beyond binary interactions by homology
Cellular processes often depend on interactions between proteins and the formation of
macromolecular complexes. The impairment of such interactions can lead to deregulation of …
macromolecular complexes. The impairment of such interactions can lead to deregulation of …
The SWISS-MODEL Repository—new features and functionality
S Bienert, A Waterhouse, TAP De Beer… - Nucleic acids …, 2017 - academic.oup.com
Abstract SWISS-MODEL Repository (SMR) is a database of annotated 3D protein structure
models generated by the automated SWISS-MODEL homology modeling pipeline. It …
models generated by the automated SWISS-MODEL homology modeling pipeline. It …
SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information
M Biasini, S Bienert, A Waterhouse… - Nucleic acids …, 2014 - academic.oup.com
Protein structure homology modelling has become a routine technique to generate 3D
models for proteins when experimental structures are not available. Fully automated servers …
models for proteins when experimental structures are not available. Fully automated servers …
Prediction of protein structures, functions and interactions using the IntFOLD7, MultiFOLD and ModFOLDdock servers
LJ McGuffin, NS Edmunds, AG Genc… - Nucleic acids …, 2023 - academic.oup.com
The IntFOLD server based at the University of Reading has been a leading method over the
past decade in providing free access to accurate prediction of protein structures and …
past decade in providing free access to accurate prediction of protein structures and …
Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database
Background Microbial inhabitants of soils are important to ecosystem and planetary
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …