[HTML][HTML] A genomic overview of the population structure of Salmonella
For many decades, Salmonella enterica has been subdivided by serological properties into
serovars or further subdivided for epidemiological tracing by a variety of diagnostic tests with …
serovars or further subdivided for epidemiological tracing by a variety of diagnostic tests with …
Persistent infection and long-term carriage of typhoidal and nontyphoidal salmonellae
O Gal-Mor - Clinical microbiology reviews, 2018 - Am Soc Microbiol
The ability of pathogenic bacteria to affect higher organisms and cause disease is one of the
most dramatic properties of microorganisms. Some pathogens can establish transient …
most dramatic properties of microorganisms. Some pathogens can establish transient …
The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity
EnteroBase is an integrated software environment that supports the identification of global
population structures within several bacterial genera that include pathogens. Here, we …
population structures within several bacterial genera that include pathogens. Here, we …
MOB-suite: software tools for clustering, reconstruction and typing of plasmids from draft assemblies
J Robertson, JHE Nash - Microbial genomics, 2018 - microbiologyresearch.org
Large-scale bacterial population genetics studies are now routine due to cost-effective
Illumina short-read sequencing. However, analysing plasmid content remains difficult due to …
Illumina short-read sequencing. However, analysing plasmid content remains difficult due to …
GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
Current methods struggle to reconstruct and visualize the genomic relationships of large
numbers of bacterial genomes. GrapeTree facilitates the analyses of large numbers of allelic …
numbers of bacterial genomes. GrapeTree facilitates the analyses of large numbers of allelic …
[HTML][HTML] The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies
CE Yoshida, P Kruczkiewicz, CR Laing, EJ Lingohr… - PloS one, 2016 - journals.plos.org
For nearly 100 years serotyping has been the gold standard for the identification of
Salmonella serovars. Despite the increasing adoption of DNA-based subtyping approaches …
Salmonella serovars. Despite the increasing adoption of DNA-based subtyping approaches …
Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico
Indigenous populations of the Americas experienced high mortality rates during the early
contact period as a result of infectious diseases, many of which were introduced by …
contact period as a result of infectious diseases, many of which were introduced by …
[HTML][HTML] Supplement 2008–2010 (no. 48) to the white–Kauffmann–Le minor scheme
S Issenhuth-Jeanjean, P Roggentin, M Mikoleit… - Research in …, 2014 - Elsevier
Abstract This supplement (no. 48) of the White–Kauffmann–Le Minor scheme reports on the
characterization of 63 new Salmonella serovars and 25 new variants of previously described …
characterization of 63 new Salmonella serovars and 25 new variants of previously described …
Salmonella serotype determination utilizing high-throughput genome sequencing data
Serotyping forms the basis of national and international surveillance networks for
Salmonella, one of the most prevalent foodborne pathogens worldwide (1–3). Public health …
Salmonella, one of the most prevalent foodborne pathogens worldwide (1–3). Public health …
[PDF][PDF] The temporal dynamics of antimicrobial-resistant Salmonella enterica and predominant serovars in China
Y Wang, Y Liu, N Lyu, Z Li, S Ma, D Cao… - National Science …, 2023 - academic.oup.com
Salmonella enterica is one of the most common bacterial pathogens in humans and
animals. Systematic studies on the trends and geographical distribution of antimicrobial …
animals. Systematic studies on the trends and geographical distribution of antimicrobial …