A model for RAS mutation patterns in cancers: finding the sweet spot

S Li, A Balmain, CM Counter - Nature Reviews Cancer, 2018 - nature.com
The three RAS genes—HRAS, NRAS and KRAS—are collectively mutated in one-third of
human cancers, where they act as prototypic oncogenes. Interestingly, there are rather …

[HTML][HTML] Error-corrected next generation sequencing–promises and challenges for genotoxicity and cancer risk assessment

F Marchetti, R Cardoso, CL Chen, GR Douglas… - … Research/Reviews in …, 2023 - Elsevier
Abstract Error-corrected Next Generation Sequencing (ecNGS) is rapidly emerging as a
valuable, highly sensitive and accurate method for detecting and characterizing mutations in …

Direct quantification of in vivo mutagenesis and carcinogenesis using duplex sequencing

CC Valentine III, RR Young… - Proceedings of the …, 2020 - National Acad Sciences
The ability to accurately measure mutations is critical for basic research and identifying
potential drug and chemical carcinogens. Current methods for in vivo quantification of …

Next‐generation genotoxicology: using modern sequencing technologies to assess somatic mutagenesis and cancer risk

JJ Salk, SR Kennedy - Environmental and Molecular …, 2020 - Wiley Online Library
Mutations have a profound effect on human health, particularly through an increased risk of
carcinogenesis and genetic disease. The strong correlation between mutagenesis and …

Duplex sequencing identifies genomic features that determine susceptibility to benzo (a) pyrene-induced in vivo mutations

DPM LeBlanc, M Meier, FY Lo, E Schmidt… - BMC genomics, 2022 - Springer
Exposure to environmental mutagens increases the risk of cancer and genetic disorders. We
used Duplex Sequencing (DS), a high-accuracy error-corrected sequencing technology, to …

Transgenic rat models for mutagenesis and carcinogenesis

T Nohmi, K Masumura, N Toyoda-Hokaiwado - Genes and Environment, 2017 - Springer
Rats are a standard experimental animal for cancer bioassay and toxicological research for
chemicals. Although the genetic analyses were behind mice, rats have been more frequently …

Genome-wide somatic mutation analysis via Hawk-Seq™ reveals mutation profiles associated with chemical mutagens

S Matsumura, H Sato, Y Otsubo, J Tasaki, N Ikeda… - Archives of …, 2019 - Springer
It is difficult to identify mutagen-induced genome-wide somatic mutations using next
generation sequencing; hence, mutagenic features of each mutagen and their roles in …

Chemically induced mutations in a MutaMouse reporter gene inform mechanisms underlying human cancer mutational signatures

MA Beal, MJ Meier, DP LeBlanc, C Maurice… - Communications …, 2020 - nature.com
Transgenic rodent (TGR) models use bacterial reporter genes to quantify in vivo
mutagenesis. Pairing TGR assays with next-generation sequencing (NGS) enables …

Paternal exposure to benzo (a) pyrene induces genome-wide mutations in mouse offspring

MA Beal, MJ Meier, A Williams… - Communications …, 2019 - nature.com
Understanding the effects of environmental exposures on germline mutation rates has been
a decades-long pursuit in genetics. We used next-generation sequencing and comparative …

Utilizing biological experimental data and molecular dynamics for the classification of mutational hotspots through machine learning

JG Davies, GE Menzies - Bioinformatics Advances, 2024 - academic.oup.com
Motivation Benzo [a] pyrene, a notorious DNA-damaging carcinogen, belongs to the family
of polycyclic aromatic hydrocarbons commonly found in tobacco smoke. Surprisingly …