Natural variations and genome-wide association studies in crop plants

X Huang, B Han - Annual review of plant biology, 2014 - annualreviews.org
Natural variants of crops are generated from wild progenitor plants under both natural and
human selection. Diverse crops that are able to adapt to various environmental conditions …

Perspectives for genomic selection applications and research in plants

N Heslot, JL Jannink, ME Sorrells - Crop Science, 2015 - Wiley Online Library
Genomic selection (GS) has created a lot of excitement and expectations in the animal‐and
plant‐breeding research communities. In this review, we briefly describe how genomic …

Canopy temperature and vegetation indices from high-throughput phenotyping improve accuracy of pedigree and genomic selection for grain yield in wheat

J Rutkoski, J Poland, S Mondal… - G3: Genes …, 2016 - academic.oup.com
Genomic selection can be applied prior to phenotyping, enabling shorter breeding cycles
and greater rates of genetic gain relative to phenotypic selection. Traits measured using …

Genome-wide association study identifies a gene responsible for temperature-dependent rice germination

H Yoshida, K Hirano, K Yano, F Wang, M Mori… - Nature …, 2022 - nature.com
Environment is an important determinant of agricultural productivity; therefore, crops have
been bred with traits adapted to their environment. It is assumed that the physiology of seed …

dartR v2: An accessible genetic analysis platform for conservation, ecology and agriculture

JL Mijangos, B Gruber, O Berry… - Methods in Ecology …, 2022 - Wiley Online Library
Innumerable approaches to analyse genetic data are now available to guide conservation,
ecological and agricultural projects. However, streamlined and accessible tools are needed …

[图书][B] Genetic data analysis for plant and animal breeding

F Isik, J Holland, C Maltecca - 2017 - Springer
We wrote this book to fill the gap between textbooks of quantitative genetic theory and
software manuals that provide details on analytical methods but little context or perspective …

Training set optimization under population structure in genomic selection

J Isidro, JL Jannink, D Akdemir, J Poland… - Theoretical and applied …, 2015 - Springer
Key message Population structure must be evaluated before optimization of the training set
population. Maximizing the phenotypic variance captured by the training set is important for …

Genome-environment associations in sorghum landraces predict adaptive traits

JR Lasky, HD Upadhyaya, P Ramu, S Deshpande… - Science …, 2015 - science.org
Improving environmental adaptation in crops is essential for food security under global
change, but phenotyping adaptive traits remains a major bottleneck. If associations between …

Software for genome‐wide association studies in autopolyploids and its application to potato

UR Rosyara, WS De Jong, DS Douches… - The plant …, 2016 - Wiley Online Library
Genome‐wide association studies (GWAS) are widely used in diploid species to study
complex traits in diversity and breeding populations, but GWAS software tailored to …

Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America

K Swarts, RM Gutaker, B Benz, M Blake, R Bukowski… - Science, 2017 - science.org
By 4000 years ago, people had introduced maize to the southwestern United States; full
agriculture was established quickly in the lowland deserts but delayed in the temperate …