geomorph: an r package for the collection and analysis of geometric morphometric shape data

DC Adams, E Otárola‐Castillo - Methods in ecology and …, 2013 - Wiley Online Library
Many ecological and evolutionary studies seek to explain patterns of shape variation and its
covariation with other variables. Geometric morphometrics is often used for this purpose …

Application of shape analyses to recording structures of marine organisms for stock discrimination and taxonomic purposes

F Lishchenko, JB Jones - Frontiers in Marine Science, 2021 - frontiersin.org
Morphometric analysis of biogenic recording structures within marine organisms has
applications in stock assessment, taxonomics, and ecomorphological studies, with shape …

The challenge of species delimitation at the extremes: diversification without morphological change in Philippine sun skinks

AJ Barley, J White, AC Diesmos, RM Brown - Evolution, 2013 - academic.oup.com
An accurate understanding of species diversity is essential to studies across a wide range of
biological subdisciplines. However, delimiting species remains challenging in evolutionary …

High-throughput micro-CT scanning and deep learning segmentation workflow for analyses of shelly invertebrates and their fossils: Examples from marine Bivalvia

SM Edie, KS Collins, D Jablonski - Frontiers in Ecology and Evolution, 2023 - frontiersin.org
The largest source of empirical data on the history of life largely derives from the marine
invertebrates. Their rich fossil record is an important testing ground for macroecological and …

A deep learning approach for morphological feature extraction based on variational auto-encoder: an application to mandible shape

M Tsutsumi, N Saito, D Koyabu… - NPJ systems biology and …, 2023 - nature.com
Shape measurements are crucial for evolutionary and developmental biology; however, they
present difficulties in the objective and automatic quantification of arbitrary shapes …

[HTML][HTML] Differentiating between cutting actions on bone using 3D geometric morphometrics and Bayesian analyses with implications to human evolution

E Otárola-Castillo, MG Torquato, HC Hawkins… - Journal of …, 2018 - Elsevier
Studies of bone surface modifications (BSMs) such as cut marks are crucial to our
understanding of human and earlier hominin subsistence behavior. Over the last several …

Convergence and contingency in the evolution of a specialized mode of life: multiple origins and high disparity of rock-boring bivalves

KS Collins, SM Edie… - Proceedings of the …, 2023 - royalsocietypublishing.org
Evolutionary adaptation to novel, specialized modes of life is often associated with a close
mapping of form to the new function, resulting in narrow morphological disparity. For bivalve …

Are diet preferences associated to skulls shape diversification in xenodontine snakes?

J Klaczko, E Sherratt, EZF Setz - PLoS One, 2016 - journals.plos.org
Snakes are a highly successful group of vertebrates, within great diversity in habitat, diet,
and morphology. The unique adaptations for the snake skull for ingesting large prey in more …

Experimental tests of bivalve shell shape reveal potential tradeoffs between mechanical and behavioral defenses

EH Johnson - Scientific Reports, 2020 - nature.com
Bivalves protect themselves from predators using both mechanical and behavioral defenses.
While their shells serve as mechanical armor, bivalve shells also enable evasive behaviors …

Trends in the sand: directional evolution in the shell shape of recessing scallops (Bivalvia: Pectinidae)

E Sherratt, A Alejandrino, AC Kraemer, JM Serb… - …, 2016 - academic.oup.com
Directional evolution is one of the most compelling evolutionary patterns observed in
macroevolution. Yet, despite its importance, detecting such trends in multivariate data …