Microbial extracellular polymeric substances in the environment, technology and medicine
HC Flemming, ED van Hullebusch, BJ Little… - Nature Reviews …, 2024 - nature.com
Microbial biofilms exhibit a self-produced matrix of extracellular polymeric substances (EPS),
including polysaccharides, proteins, extracellular DNA and lipids. EPS promote interactions …
including polysaccharides, proteins, extracellular DNA and lipids. EPS promote interactions …
Recent trends in glycoproteomics by characterization of intact glycopeptides
This trends article provides an overview of the state of the art in the analysis of intact
glycopeptides by proteomics technologies based on LC–MS analysis. A brief description of …
glycopeptides by proteomics technologies based on LC–MS analysis. A brief description of …
Surface-layer protein is a public-good matrix exopolymer for microbial community organisation in environmental anammox biofilms
Extracellular polymeric substances (EPS) are core biofilm components, yet how they
mediate interactions within and contribute to the structuring of biofilms is largely unknown …
mediate interactions within and contribute to the structuring of biofilms is largely unknown …
Physiological and stoichiometric characterization of ethanol-based chain elongation in the absence of short-chain carboxylic acids
Hexanoate is a valuable chemical that can be produced by microorganisms that convert
short-chain-to medium-chain carboxylic acids through a process called chain elongation …
short-chain-to medium-chain carboxylic acids through a process called chain elongation …
Full-length single-molecule protein fingerprinting
Proteins are the primary functional actors of the cell. While proteoform diversity is known to
be highly biologically relevant, current protein analysis methods are of limited use for …
be highly biologically relevant, current protein analysis methods are of limited use for …
[HTML][HTML] Metaproteomics, metagenomics and 16S rRNA sequencing provide different perspectives on the aerobic granular sludge microbiome
HBC Kleikamp, D Grouzdev, P Schaasberg… - Water research, 2023 - Elsevier
The tremendous progress in sequencing technologies has made DNA sequencing routine
for microbiome studies. Additionally, advances in mass spectrometric techniques have …
for microbiome studies. Additionally, advances in mass spectrometric techniques have …
Production of medium‐chain‐length PHA in octanoate‐fed enrichments dominated by Sphaerotilus sp.
CM Vermeer, L Depaz, E van den Berg… - Biotechnology and …, 2023 - Wiley Online Library
Medium‐chain‐length polyhydroxyalkanoate (mcl‐PHA) production by using microbial
enrichments is a promising but largely unexplored approach to obtain elastomeric …
enrichments is a promising but largely unexplored approach to obtain elastomeric …
[HTML][HTML] A systematic evaluation of yeast sample preparation protocols for spectral identifications, proteome coverage and post-isolation modifications
M den Ridder, E Knibbe, W van den Brandeler… - Journal of …, 2022 - Elsevier
The importance of obtaining comprehensive and accurate information from cellular
proteomics experiments asks for a systematic investigation of sample preparation protocols …
proteomics experiments asks for a systematic investigation of sample preparation protocols …
Differentiation of the Anammox core microbiome: Unraveling the evolutionary impetus of scalable gene flow
Anaerobic ammonium oxidation bacteria (AAOB), distinguished by their unique autotrophic
nitrogen metabolism, hold pivotal positions in the global nitrogen cycle and environmental …
nitrogen metabolism, hold pivotal positions in the global nitrogen cycle and environmental …
Osmoregulation in freshwater anaerobic methane-oxidizing archaea under salt stress
Climate change–driven sea level rise threatens freshwater ecosystems and elicits salinity
stress in microbiomes. Methane emissions in these systems are largely mitigated by …
stress in microbiomes. Methane emissions in these systems are largely mitigated by …