Evolution and diversity of assembly-line polyketide synthases: Focus review

A Nivina, KP Yuet, J Hsu, C Khosla - Chemical reviews, 2019 - ACS Publications
Assembly-line polyketide synthases (PKSs) are among the most complex protein
machineries known in nature, responsible for the biosynthesis of numerous compounds …

Evolutionary pathways and trajectories in antibiotic resistance

F Baquero, JL Martinez, V F. Lanza… - Clinical Microbiology …, 2021 - Am Soc Microbiol
Evolution is the hallmark of life. Descriptions of the evolution of microorganisms have
provided a wealth of information, but knowledge regarding “what happened” has precluded …

Bacterial genome instability

E Darmon, DRF Leach - Microbiology and Molecular Biology …, 2014 - Am Soc Microbiol
Bacterial genomes are remarkably stable from one generation to the next but are plastic on
an evolutionary time scale, substantially shaped by horizontal gene transfer, genome …

Hydrolytic endonucleolytic ribozyme (HYER) is programmable for sequence-specific DNA cleavage

ZX Liu, S Zhang, HZ Zhu, ZH Chen, Y Yang, LQ Li… - Science, 2024 - science.org
Ribozymes are catalytic RNAs with diverse functions including self-splicing and
polymerization. This work aims to discover natural ribozymes that behave as hydrolytic and …

The role of abiotic factors modulating the plant-microbe-soil interactions: toward sustainable agriculture. A review

GS Pizano, CH Pacheco, JH Salmerón… - Spanish journal of …, 2017 - dialnet.unirioja.es
Microbial soil communities are active players in the biogeochemical cycles, impacting soil
fertility and interacting with aboveground organisms. Although soil microbial diversity has …

Evolutionary dynamics of natural product biosynthesis in bacteria

MG Chevrette, K Gutiérrez-García… - Natural product …, 2020 - pubs.rsc.org
Covering: 2008 up to 2019 The forces of biochemical adaptive evolution operate at the level
of genes, manifesting in complex phenotypes and the global biodiversity of proteins and …

A systematic computational analysis of biosynthetic gene cluster evolution: lessons for engineering biosynthesis

MH Medema, P Cimermancic, A Sali… - PLoS computational …, 2014 - journals.plos.org
Bacterial secondary metabolites are widely used as antibiotics, anticancer drugs,
insecticides and food additives. Attempts to engineer their biosynthetic gene clusters (BGCs) …

Regulated polyploidy in halophilic archaea

S Breuert, T Allers, G Spohn, J Soppa - PloS one, 2006 - journals.plos.org
Polyploidy is common in higher eukaryotes, especially in plants, but it is generally assumed
that most prokaryotes contain a single copy of a circular chromosome and are therefore …

Biological applications of the theory of birth-and-death processes

AS Novozhilov, GP Karev… - Briefings in bioinformatics, 2006 - academic.oup.com
In this review, we discuss applications of the theory of birth-and-death processes to
problems in biology, primarily, those of evolutionary genomics. The mathematical principles …

Multiple ribosomal RNA operons in bacteria; their concerted evolution and potential consequences on the rate of evolution of their 16S rRNA

RT Espejo, N Plaza - Frontiers in microbiology, 2018 - frontiersin.org
Bacterial species differ greatly in the number and location of the rRNA operons which may
be present in the bacterial chromosomes and plasmids. Most bacterial species contain more …